Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00531 ATGGCTAACTTAGCACCTCTGTTCTTGCTTTCTTGCTTTCTGTCATTCTTCACTTCATCCTTGCATGCCCTTTCAACAGAAAAATCTAACAATCCCAAACCTATTCCAAACTATATCCCCAACACCCCAAAAAGTTTGattcaaaaccaaatagaTTCATGCTGGCGGGCCAAATCAGATTGGGCATCAAATCGCCAAGCCTTGGCTGATTGTGCTGTTGGCTATGGCAAAGATGCCACTGGTGGCAAGAGTGGTGCAATCTATAAGGTCACTGACCCCTCCGATGACCCTATCAACCCCAAGCCAGGCACACTTCGTTATGGTGTAATCCAAAGCCAACCCCTTTGGATCATTTTTGAGAGAGACATGGTTATCACTCTGGAGAATGAGCTTATGATGAATAGCTACAAGACCATTGATGGGAGAGGAGCTAAAGTGGAGATTGCAAATGGGCCTTGCATTACAATCCAAGATGTTAACCATGTTATCATACATGGCATTAGCATCCATGACTGCAAACCAGGCAAGGCTGGCATGGTTAGGAGTTCCCCTGACCATGTTGGATATCGTCAAGGGTCTGATGGAGATGCCATCGATATATTTGCTTCGTCAAATATTTGGATCGACCATTGCTCTCTGGCTCGCTGCACTGATGGTCTTATTGATGTCATCCATGCCTCCACTGCCGTCACAATCTCTAACAATTATTTCACTCAGCATGACAAAGTGATGCTGCTAGGACACAGTGATGACTACGCTGCAGACAGGATAATGAAAGTAACAGTAGCCTTCAACCGTTTTGGCAGTGGCCTAATTGAAAGGATGCCAAGGGTAAGATTTGGCTACGCTCATGTGGTGAATAACCGGTACGAAGAGTGGCTGATGTATGCCATTGGTGGCAGTGCTGATCCAACAATTTTCAGTGAAGGGAACTACTTCATAGCTTCAAATGACAATACTGCAAAGCAGGTTACCAAGAGGGAAGTAGATGGAAATTGGAGCAATTGGAAATGGAGGACTTATAGAGATGAATTCTTAAATGGTGCTTATTTTGTTCCATCTGGGTATGGAACTTGTGCCCCTTATTATACACCTGCACAATCTTTCGTAGCTTCTCCTGCGTCCTTGGTGCCTGCATTAACTCAAGATGCAGGCCCTTTGAGTTGCGTTATTGACAAAGAATGCTA 1187 0.4414 MANLAPLFLLSCFLSFFTSSLHALSTEKSNNPKPIPNYIPNTPKSLIQNQIDSCWRAKSDWASNRQALADCAVGYGKDATGGKSGAIYKVTDPSDDPINPKPGTLRYGVIQSQPLWIIFERDMVITLENELMMNSYKTIDGRGAKVEIANGPCITIQDVNHVIIHGISIHDCKPGKAGMVRSSPDHVGYRQGSDGDAIDIFASSNIWIDHCSLARCTDGLIDVIHASTAVTISNNYFTQHDKVMLLGHSDDYAADRIMKVTVAFNRFGSGLIERMPRVRFGYAHVVNNRYEEWLMYAIGGSADPTIFSEGNYFIASNDNTAKQVTKREVDGNWSNWKWRTYRDEFLNGAYFVPSGYGTCAPYYTPAQSFVASPASLVPALTQDAGPLSCVIDKEC 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00531 395 PANTHER PECTATE LYASE 5 393 - -
Bva13g00531 395 PANTHER PECTATE LYASE 18-RELATED 5 393 IPR045032 GO:0030570
Bva13g00531 395 SMART amb_all 122 319 IPR002022 -
Bva13g00531 395 Gene3D - 48 388 IPR012334 -
Bva13g00531 395 Pfam Pectate lyase 131 313 IPR002022 -
Bva13g00531 395 SUPERFAMILY Pectin lyase-like 49 386 IPR011050 -
Bva13g00531 395 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Bva13g00531 395 PRINTS Pollen allergen Amb family signature 94 119 IPR018082 -
Bva13g00531 395 PRINTS Pollen allergen Amb family signature 366 389 IPR018082 -
Bva13g00531 395 PRINTS Pollen allergen Amb family signature 194 215 IPR018082 -
Bva13g00531 395 PRINTS Pollen allergen Amb family signature 336 360 IPR018082 -
Bva13g00531 395 PRINTS Pollen allergen Amb family signature 71 88 IPR018082 -
Bva13g00531 395 PRINTS Pollen allergen Amb family signature 130 146 IPR018082 -
Bva13g00531 395 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00531 Bva-Chr13 2409793 2411316 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00531 7 395 Polysaccharide Lyase AT4G22080 68.878 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00531 K01728 - gmx:100803229 622.854