Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00530 ATGAGTTTAAAGCATAACAAAATAGACTCTTGCTGGcgcatcaaatcaaattgggCATCAAATCGCCAAGCTTTGGCTGATTGTGCTGTTGGCTATGGCAGAGATGCCACTGGTGGCAAGTATGGTGTAATATATAAGGTCACTGACCCTTCCGATGACCCTATCGACCCCAAACCAGGCACACTTCGTTATGGTGTAATCCAAAAGCAACCCCTTTGGATCATTTTTGACAGAGACATGGTTATCACCCTCAAGAATGAGCTTGTCATGAATAGCTACAAGACCATTGATGGGAGAGGAGCTAAAGCGGAGATTGCAAATGGGCCTTGCATCACAATCCAAAATGTTTGGCATGTTATCATACATGGCATTAGCATCCATGACTGCAAACCAGCCAAGGCTGGCATGGTGAGGAGTTCTCTTGACCATGTTGGCCATCGTAGTGGCGCTGATGGAGATGCCATTAGCATATTTCACTCCTCAAATATTTGGATTGATCATTGCTTCTTGGCTCGTTCTGCCGATGGCCTAATTGACATTATCCATTCCTCAAATGCTATCACCATTTCTAACAATTACTTCACCCAGCATGACAAAGTGATGTTACTAGGACATGACGATCGATATGCTGCAGATAAAATAATGAGAGTGACTATAGCCTTCAACCGTTTTGGCCGTGGCTTAATTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCCCATGTGGTCAACAACAGGTATGACGAGTGGGGAATGTATGCCATTGGTGGCAGTGCTAACCCAACAATTTTAAGTGAAGGGAACTACTTTGTAGCTCCAAAAGATCCTTATAGCAAGCAGGTTACCAAGAGGGAAGGGAACATGAATGGTTGGAAGAATTGGAAATGGAGGTCTTACAAGGATGCATTCCTGAATGGCGCTTATTTTGTTCCATCTGGTTATGGAAGCTGTGATCCTCATTATACAGCTGCTCAATCTTTTATCGCTGCTCCAGCAGCCCTTGTGCCTGCATGGACTCTCAATGCAGGTCCTCTGAGCTGTGTTGTTGGTAAAGAATGTTA 1061 0.4345 MSLKHNKIDSCWRIKSNWASNRQALADCAVGYGRDATGGKYGVIYKVTDPSDDPIDPKPGTLRYGVIQKQPLWIIFDRDMVITLKNELVMNSYKTIDGRGAKAEIANGPCITIQNVWHVIIHGISIHDCKPAKAGMVRSSLDHVGHRSGADGDAISIFHSSNIWIDHCFLARSADGLIDIIHSSNAITISNNYFTQHDKVMLLGHDDRYAADKIMRVTIAFNRFGRGLIERMPRVRFGYAHVVNNRYDEWGMYAIGGSANPTILSEGNYFVAPKDPYSKQVTKREGNMNGWKNWKWRSYKDAFLNGAYFVPSGYGSCDPHYTAAQSFIAAPAALVPAWTLNAGPLSCVVGKEC 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00530 353 Gene3D - 5 346 IPR012334 -
Bva13g00530 353 SUPERFAMILY Pectin lyase-like 6 344 IPR011050 -
Bva13g00530 353 PANTHER PECTATE LYASE 6 352 - -
Bva13g00530 353 SMART amb_all 79 276 IPR002022 -
Bva13g00530 353 PRINTS Pollen allergen Amb family signature 151 172 IPR018082 -
Bva13g00530 353 PRINTS Pollen allergen Amb family signature 231 250 IPR018082 -
Bva13g00530 353 PRINTS Pollen allergen Amb family signature 253 272 IPR018082 -
Bva13g00530 353 PRINTS Pollen allergen Amb family signature 87 103 IPR018082 -
Bva13g00530 353 PRINTS Pollen allergen Amb family signature 294 318 IPR018082 -
Bva13g00530 353 PRINTS Pollen allergen Amb family signature 28 45 IPR018082 -
Bva13g00530 353 PRINTS Pollen allergen Amb family signature 51 76 IPR018082 -
Bva13g00530 353 PRINTS Pollen allergen Amb family signature 324 347 IPR018082 -
Bva13g00530 353 PANTHER PECTATE LYASE 18-RELATED 6 352 IPR045032 GO:0030570
Bva13g00530 353 Pfam Pectate lyase 85 270 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00530 Bva-Chr13 2407199 2408529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00530 3 353 Polysaccharide Lyase AT1G11920 70.940 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00530 K01728 - gmx:100807483 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00530 13 2407199 2408529 Bva13g00530 13 2407199 2408529 ECH