LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva13g00528	ATGGACAAGGGATGGGGCCTCACACTGGATAGTTCTTCTTGTAATTATTCTCTCGGTTTCTTTCCATCCAAACAGCCCGCTAACACCGCCAATACCCTCTCCGTCTCCAAGCTTAACCAAGAAACCATGTTTCCTCCGGGTTTAGGCTTCCCGGTCAACTTGACCCGCCGCGATGACCGCTTACCGTCCGATGATGATCGTGTGGTCGACTTTTTCGCTGATAGAAACAAGTCTTCGTCAACTCCATCTGATCACGACGATCATCGTCGCCATGTTAAAACCGCTACTGCTGGTATCTCCGTCAAGAAGGAAAATTCTCACCTCGAACCTCCTCACAAGTCTGATTTGGATGTAAATACTGGGTTACAGCTCCTTACGGCTAACACTAAGAGCGAGCAATCGACGGTGGATGATGGAGTTTCGTCAGATGCCGAAGATAAGCGAGCCAAGAATGCCGAGATGGCGGAATTGCAGGACGAACTTCAGCGGATGAACGCAGAAAACCAGAGACTGAAGGAGATGCTGAGCCATGTGAGCAGTAACTACACCGCCTTGCAAATACATCTGACCACATTAATGCAACAGCAACAGAGCCACCGCGCCGAGAACAAGGAACATGAGgttGTTGATGGAAAAAGTGAGGAGAAAAGTCAAAATGATGGAGTGGTGCCAAGGCAGTTTCTGGATTTAAGATCTAGTGGTACAGGTGAAATAGATGATCAAGTATCCAATTCTTTATCAGATGAAAGAACTCTATCTAGTACACCTGATCAGAACAACCACAACAATGGCAAAAAGGAAATTACGAGGGAAGAGAGTCCAGACTCTGAAACACGAGCTTGGGGTCCTAGTAATAAGGTTCAGAAATTGAACACTTCAACCAACACGGATCAGTCCAGCCCCGAAGCCACCATGAGGAAAGCCCGTGTCTCCGTTCGCGCTCGATCAGAGGCTCCCATGATCAGTGATGGGTGCCAATGGCGAAAATATGGACAAAAAATGGCAAAGGGAAACCCGTGTCCTCGTGCATATTATAGGTGCACCATGGCAGTTGGTTGCCCCGTTCGCAAACAAGTTCAACGTTGTGCGGAGGACAGAACGATTTTAATCACTACTTATGAAGGAGCGCATAACCATCCATTGCCACCTGCTGCAATGGCCATGGCAAATACTACAGCAGCTGCTGCTACCATGTTGCTATCTGGGTCTATGTCTAGTGCAGATGGGATAATGAACCCCAATTTGCTAGCAAGAGCTATTCTTCCTTGCTCCACGAGCCTGGCAACACTTTCGGCTTCGGCGCCATTCCCCACCGTCACATTAGACCTCACACACAACCCAAACGCGAACCCATTGCAGTTTCAAAGGCCACAAACATCATTTCAGGTTCCCTTTGGTTCGGGACCAACCCCAGCAGCTGGTCAACTCCCTCAGGTGTTTGCACAAGCACTTTATAATCAGTCCAAATTCTCAGGCCTTCAGTTATCTCAAGATATGGCTTCTTCCCAATCACCCAACCAAGCTCCAAGGTCATCACTGCAGGCAAACCAGAATCAGCCCTCGCTGACCGACACGGTCAGTGCCGCCACCGCAGCCATCACCGCCGACCCTAACTTCACTGCTGTACTTGCCGCCGCCATCTCCTCCATCATCGGCGGTGCTCATccaaacaacaacaataataatagcaGCAGCAATCCCAACATTACCAACAGCACTACAATCAGCAGCTTTTcagggaatta	1745	0.4825	MDKGWGLTLDSSSCNYSLGFFPSKQPANTANTLSVSKLNQETMFPPGLGFPVNLTRRDDRLPSDDDRVVDFFADRNKSSSTPSDHDDHRRHVKTATAGISVKKENSHLEPPHKSDLDVNTGLQLLTANTKSEQSTVDDGVSSDAEDKRAKNAEMAELQDELQRMNAENQRLKEMLSHVSSNYTALQIHLTTLMQQQQSHRAENKEHEVVDGKSEEKSQNDGVVPRQFLDLRSSGTGEIDDQVSNSLSDERTLSSTPDQNNHNNGKKEITREESPDSETRAWGPSNKVQKLNTSTNTDQSSPEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGAHNHPLPPAAMAMANTTAAAATMLLSGSMSSADGIMNPNLLARAILPCSTSLATLSASAPFPTVTLDLTHNPNANPLQFQRPQTSFQVPFGSGPTPAAGQLPQVFAQALYNQSKFSGLQLSQDMASSQSPNQAPRSSLQANQNQPSLTDTVSAATAAITADPNFTAVLAAAISSIIGGAHPNNNNNNSSSNPNITNSTTISSFSGN	581

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva13g00528	581	MobiDBLite	consensus disorder prediction	495	522	-	-
	Bva13g00528	581	SUPERFAMILY	WRKY DNA-binding domain	314	382	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Bva13g00528	581	MobiDBLite	consensus disorder prediction	557	581	-	-
	Bva13g00528	581	Gene3D	WRKY domain	305	383	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Bva13g00528	581	MobiDBLite	consensus disorder prediction	263	277	-	-
	Bva13g00528	581	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	69	563	IPR044810	GO:0003700
	Bva13g00528	581	MobiDBLite	consensus disorder prediction	119	138	-	-
	Bva13g00528	581	PANTHER	WRKY TRANSCRIPTION FACTOR 6	69	563	-	-
	Bva13g00528	581	MobiDBLite	consensus disorder prediction	193	306	-	-
	Bva13g00528	581	MobiDBLite	consensus disorder prediction	72	94	-	-
	Bva13g00528	581	Pfam	WRKY DNA -binding domain	323	380	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bva13g00528	581	MobiDBLite	consensus disorder prediction	278	305	-	-
	Bva13g00528	581	ProSiteProfiles	WRKY domain profile.	316	382	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bva13g00528	581	SMART	WRKY_cls	321	381	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bva13g00528	581	MobiDBLite	consensus disorder prediction	72	149	-	-
	Bva13g00528	581	Coils	Coil	147	181	-	-
	Bva13g00528	581	MobiDBLite	consensus disorder prediction	236	262	-	-
	Bva13g00528	581	MobiDBLite	consensus disorder prediction	199	219	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva13g00528	Bva-Chr13	2396866	2399356	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva13g00528	1	562	WRKY Transcription Factor Family	AT1G62300	52.231	6.46e-161	469

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Bva13g00528		WRKY	6.9e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva13g00528	-		-	ccaj:109803638	647.506

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva13g00528	13	2396866	2399356	Bva13g00528	13	2396866	2399356	ECH
	Bva14g00627	14	2945691	2948103	Bva13g00528	13	2396866	2399356	ECH
	Bva12g02724	12	19885875	19888701	Bva13g00528	13	2396866	2399356	ECH
	Bva09g00479	09	2541899	2544505	Bva13g00528	13	2396866	2399356	ECH
	Bva07g02164	07	18193687	18196139	Bva13g00528	13	2396866	2399356	ECH