Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00526 ATGGAATGGACCAGGGGCTGCACCGTCGGCCGTGGCTCTACCGCCACCGTCTACATTGCCACGTCTTGCCGGTCTGGTGATGTGTTTGCCGTGAAGTCCGCCGAGCTCTCCAAATCGGAATTCCTCATGGGGGAACAGAGGATTCTGTCCACGTTGAAGTCTTGTCCTCAAATTGTAGCATACAAAGGTTGTGATGTTACATTAGAAAATGGTACATTCTTGTACAATTTGTTCATGGAATATGCACCTCACGGCACTCTTTCCGATATAATTCGCAATGGTGGCCTCATTGAGGAGGCTCTGGTTCGAACCTATGCGCGCCAAATTCTGCTTGGCCTGAACCACCTTCACTCCAATGGGGTTGTGCATTGTGATATAAAGGGTCAAAATCTGCTGCTCACCGATGAAGGAGTGAAAATTGCCGACTTGGGTTGTGCTCGGAGAGTGGCGGATTCTGATGGGGTGATCGCCGGCACGCCGGTGTTCATGGGGCCAGAGGTAGCGCGGGGCGAGAAACAGGGGTTCCCAGCTGATGTGTGGGCTCTCGGGTGTACCGTGTTGGAGATGATCACAGGGAAGGCACCATGGGCTGACGTGTCTGACCCGGTAACTGCACTTTATCGGATCGGTTTCTCCGGCGAGGTGCCGGACATACCTTGTTTCGTGTCAGAGCAGGGGAAGGATTTTCTGATCAAGTGTTTGAAGAGAGACCCGAATGAGAGGTGGTCAGTGGGTGAGCTTCTCAAACACGGGTTCGTCCAGGAATCAAAGCAAGAAGCAGGTGATCTCACTCGCAATTTGAATACTCCAACCAGTGTATTGGATCCAAGCTTTTGGAATTCAACGTCAATGGAGGATTCGGAAACAATTCAGAGTCCGACCCGTATTTACTCGGATTCTGGTAGAGATAGAATTCATCGTTTGCGTGGAGAAGCTACGACGCCGTTTGGTGGTATGCCCAATTGGGAATGGGATGACAGCTGGGTAACAGTGAGAAGCAATAATGGGGAAGGCCACGAGGCAGAGGGTAACATGCGACAAGGTgatgaaaatagagaaatttgtGAAGGTGGGCCACATACTGACTGCATAATTACATTTAGAGaggatattaatattaatgtggTCATTTCTGAAAGTGACACCAGCACAAGTACAGGAACCACACCTGGATTGAGCATTTGTAATTTCAGTAGTGATAGCAATAGCAATAGTAGCTGCAATATCACCCAGAATTGTTGTAACAGACATCCATTGTCAGATTTTTCATGTATGACTATGAACAATGATATAAAAGAAGCACTTTTGATCCTCAAGCAAAGGATATTGTTCAATttaccatttcttttcttctcttctatcCCGAATTTAGTTCAAATTGAAATGGCTCATCTCTGTTTCCCATGTTTGCCCATCTG 1418 0.4605 MEWTRGCTVGRGSTATVYIATSCRSGDVFAVKSAELSKSEFLMGEQRILSTLKSCPQIVAYKGCDVTLENGTFLYNLFMEYAPHGTLSDIIRNGGLIEEALVRTYARQILLGLNHLHSNGVVHCDIKGQNLLLTDEGVKIADLGCARRVADSDGVIAGTPVFMGPEVARGEKQGFPADVWALGCTVLEMITGKAPWADVSDPVTALYRIGFSGEVPDIPCFVSEQGKDFLIKCLKRDPNERWSVGELLKHGFVQESKQEAGDLTRNLNTPTSVLDPSFWNSTSMEDSETIQSPTRIYSDSGRDRIHRLRGEATTPFGGMPNWEWDDSWVTVRSNNGEGHEAEGNMRQGDENREICEGGPHTDCIITFREDININVVISESDTSTSTGTTPGLSICNFSSDSNSNSSCNITQNCCNRHPLSDFSCMTMNNDIKEALLILKQRILFNLPFLFFSSIPNLVQIEMAHLCFPCLPI 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00526 472 CDD STKc_MAPKKK 2 253 - -
Bva13g00526 472 Gene3D Transferase(Phosphotransferase) domain 1 2 308 - -
Bva13g00526 472 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Bva13g00526 472 PANTHER MAP KINASE KINASE KINASE 1 356 - -
Bva13g00526 472 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Bva13g00526 472 SUPERFAMILY Protein kinase-like (PK-like) 3 287 IPR011009 -
Bva13g00526 472 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g00526 472 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 356 - -
Bva13g00526 472 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g00526 472 Pfam Protein kinase domain 7 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g00526 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00526 Bva-Chr13 2386382 2387800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00526 3 351 MAP Kinase Kinase Kinase AT5G55090 48.077 3.03e-107 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Bva13g00526 Pkinase 2.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00526 K20716 - tcc:18597189 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00526 13 2386382 2387800 Bva13g00526 13 2386382 2387800 ECH
Bva09g00481 09 2552616 2553245 Bva13g00526 13 2386382 2387800 ECH
Bva07g02163 07 18187376 18188605 Bva13g00526 13 2386382 2387800 ECH