Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00501 ATGTCTTGCTCGAACCTGACAATGTGGGTGTCCTCAAAACCTTCTCTTTCTGATGGATCTTCACTTTCCTTTCGCTCTGTCCTCAACCCTTTTCAGCTTCCTTCCCAAAATTCATCCTCTTTCAGCCTATCAAGATCCTCAGCAACCCAAATTCAGTGTGGTCTCCGTGAGCTCAGAGACCGTATTGATTCTGTGAAGAATACCCAGAAAATTACAGAGGCTATGAAGCTTGTGGCTGCTGCAAAAGTCAGAAGAGCACAAGAAGCTGTTGTTAATGGCAGACCTTTCTCAGAGACCCTTGTTGAAGTGCTTTACAACATCAATGAGCAGCTTTCAACTGAAGATATTGATGTTCCTCTGACCAAGGCTAGGCCTGTGAAGAAGGTTGCCCTGGTTGTTTGCACAGGAGATCGAGGTTTATGTGGTGcttttaataataacatcATAAAGAAAGCTGAGGCGAGAATTGCCGAGTTGAAGGATCTTGGTCTTGATTATACTGTTATCAGTGTTGGTAAAAAGGGTAATACATATTTCCTTCGCCGGCCTTACATTCCGGTTGATAGGTTTCTGGAAGGCGGTTCACTTCCCACTGCAAAAGAAGCTCAAACAATTGCTGATGATGTTTTCTCACTCTTTGTCAGTGAAGAGGTTGATAAAGTGGAGCTTTTATACACCAAATTCGTGTCATTAGTCAAGTCAGATCAAGTAATTCATACCTTGCTTCCACTTTCCCCGAAAGGAGAGATCTGTGATGTGAATGGTAATTGTGTTGATGCAGCCGAGGATGAGTTCTTCAGGTTAACAACCAAGGAAGGGAAGCTAACTGTGGAAAGAGATAGTGTGAGGACTGAGACAGCAGATTTCTCTCCTATTTTGCAATTTGAGCAGGACCCAGTTCAGATCCTTGATGCCTTGCTGCCTCTCTATCTCAATAGCCAAATCTTGAGGGCATTGCAGGAGTCACTGGCCAGTGAGCTGGCTGCTAGAATGAGTGCCATGAGCAGTGCAAGTGATAATGCAGTGGAATTGAAGAAAACCTTGTCAACCGTCTACAACAGGCAACGTCAAGCTAAAATCACTGGAGAAATTCTTGAAATTGTTGCCGGTGCCAATGCCCTAGTTTA 1127 0.4366 MCVGKKGNTYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDQVIHTLLPLSPKGEICDVNGNCVDAAEDEFFRLTTKEGKLTVERDSVRTETADFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSASDNAVELKKTLSTVYNRQRQAKITGEILEIVAGANALV 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00501 207 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 1 206 IPR035968 GO:0015986|GO:0045261|GO:0046933
Bva13g00501 207 CDD F1-ATPase_gamma 1 203 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva13g00501 207 PRINTS ATP synthase gamma subunit signature 184 205 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva13g00501 207 PRINTS ATP synthase gamma subunit signature 153 172 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva13g00501 207 PRINTS ATP synthase gamma subunit signature 51 68 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva13g00501 207 PANTHER ATP SYNTHASE GAMMA CHAIN 2 207 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva13g00501 207 ProSitePatterns ATP synthase gamma subunit signature. 192 205 IPR023632 -
Bva13g00501 207 Pfam ATP synthase 1 206 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva13g00501 207 Gene3D ATP synthase, gamma subunit, helix hairpin domain 103 206 - -
Bva13g00501 207 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 2 206 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva13g00501 207 Gene3D - 1 77 - -
Bva13g00501 207 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 2 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00501 Bva-Chr13 2287230 2288772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00501 1 206 Primary Pumps ATPases AT1G15700 75.362 2.15e-108 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00501 K02115 - mnt:21396694 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00501 13 2287230 2288772 Bva13g00501 13 2287230 2288772 ECH
Bva14g00594 14 2797856 2799260 Bva13g00501 13 2287230 2288772 ECH