Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00487 ATGGGCCAGCAACCGAACCAACAATACCCGCAGCAACAACCGTATATGATGATGCCGCCTCAGGCCCAGGCGCCGCCGATGTGGGCTCCATCGGCTCAGCCACCGCCTCAGCCTGTTGCTCAACCGCAACCGACTCAATCGGCCCAACCGACTAGCGCCGATGAGGTTCGCACACTCTGGATCGGCGATTTGCAGTACTGGATGGACGAGAACTATCTTTATAGTTGTTTTGCTCACACTGGCGAGGTAGCCTCAGTGAAAGTAATACGGAATAAGCAAACTAATCAATCCGAAGGTTATGGGTTTATTGAGTTTTATACTCGTGCAGCTGCTGAGAGAATACTTCAAACATTTAATGGTactatcatgccaaatggtgGTCAAAGCTTCAGACTGAACTGGGCAACTTTTAGTGCTGGTGAGAGGCGTCATGATGATACTCCAGACTACACAATATTCGTAGGGGACTTGGCTGCAGATGTTACTGATTATATGCTACAGGATACGTTTAGGAGCCGGTATCCCTCAATTAAGGGTGCAAAAGTTGTAATCGATAGGCTTACTGGGCGGACAAAGGGATATGGCTTTGTTAGATTTGGAAATGAGAGTGACCAATTGCAAGCTATGACTGAGATGCAAGGAGTTCTTTGTTCAACAAGACCCATGCGTATTGGACCAGCCACTAACAAAACCCCCGGCAATCAGCAAAAAGCTTCTTATCAGAATCCTGGGACACAGAACGAGAATGATCCAAATAACACAACTATATTTGTTGGTAATTTGGATGCTAATGTCAATGATGATCATCTAAGGCAAGTTTTTGGTCAGTATGGAGAGTTAGTACATGTTAAGATCCCAGCTGGGAAACGATGTGGGTTTGTTCAATTTGCTGACAGGAGCTGTGCAGAAGAGGCGCTGCGGATGTTGAATGGAACAGTGTTGGGTGGACAAAATGTTCGTCTTTCATGGGGCCGTAGTCCTTCAAACAAACagGCTCAGCCAGATCCAAACCAATGGAATGGTGGTGGGTATTACGGATACTCTCAGGGGTATGAAAATTATGGATATGCCCCAACTGGTGCAGGAGCTGCGGCCCAGGATCCCAACATGTATGGAGCCTATCCTGGGTACTCCAATTACCAACCTCCACAGCAACAGCAGCAAATGGGATATAGTTA 1178 0.4626 MGQQPNQQYPQQQPYMMMPPQAQAPPMWAPSAQPPPQPVAQPQPTQSAQPTSADEVRTLWIGDLQYWMDENYLYSCFAHTGEVASVKVIRNKQTNQSEGYGFIEFYTRAAAERILQTFNGTIMPNGGQSFRLNWATFSAGERRHDDTPDYTIFVGDLAADVTDYMLQDTFRSRYPSIKGAKVVIDRLTGRTKGYGFVRFGNESDQLQAMTEMQGVLCSTRPMRIGPATNKTPGNQQKASYQNPGTQNENDPNNTTIFVGNLDANVNDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTVLGGQNVRLSWGRSPSNKQAQPDPNQWNGGGYYGYSQGYENYGYAPTGAGAAAQDPNMYGAYPGYSNYQPPQQQQQMGYS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00487 392 SUPERFAMILY RNA-binding domain, RBD 240 352 IPR035979 GO:0003676
Bva13g00487 392 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 8 389 - -
Bva13g00487 392 CDD RRM1_SECp43_like 58 138 - -
Bva13g00487 392 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 8 389 - -
Bva13g00487 392 MobiDBLite consensus disorder prediction 378 392 - -
Bva13g00487 392 MobiDBLite consensus disorder prediction 224 251 - -
Bva13g00487 392 Gene3D - 1 140 IPR012677 -
Bva13g00487 392 MobiDBLite consensus disorder prediction 1 18 - -
Bva13g00487 392 CDD RRM2_SECp43_like 149 228 - -
Bva13g00487 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 326 IPR000504 GO:0003723
Bva13g00487 392 Gene3D - 239 362 IPR012677 -
Bva13g00487 392 SMART rrm1_1 151 225 IPR000504 GO:0003723
Bva13g00487 392 SMART rrm1_1 255 322 IPR000504 GO:0003723
Bva13g00487 392 SMART rrm1_1 58 133 IPR000504 GO:0003723
Bva13g00487 392 MobiDBLite consensus disorder prediction 19 43 - -
Bva13g00487 392 MobiDBLite consensus disorder prediction 373 392 - -
Bva13g00487 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 152 215 IPR000504 GO:0003723
Bva13g00487 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 124 IPR000504 GO:0003723
Bva13g00487 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 319 IPR000504 GO:0003723
Bva13g00487 392 SUPERFAMILY RNA-binding domain, RBD 36 136 IPR035979 GO:0003676
Bva13g00487 392 MobiDBLite consensus disorder prediction 1 53 - -
Bva13g00487 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 150 229 IPR000504 GO:0003723
Bva13g00487 392 Gene3D - 141 238 IPR012677 -
Bva13g00487 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 137 IPR000504 GO:0003723
Bva13g00487 392 CDD RRM3_NGR1_NAM8_like 253 324 - -
Bva13g00487 392 SUPERFAMILY RNA-binding domain, RBD 145 243 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00487 Bva-Chr13 2213925 2217710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00487 59 333 Eukaryotic Initiation Factors Gene Family AT4G34110 24.911 1.59e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00487 - - aprc:113864230 588.956