Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00470 ATGGACTCACAGAAGTTGTCGCTTTCCCGAGAAAACCCTAGACCTCTGGTGTTTCCTACTGAGCGAGTGGTTTCTTCTGCGAACACAAAATCCATGCCCGTTGAGATCGGGCAGAAACCTCCTCCTTCGATACTCGACCGGTTCAAGGCCTTGCTCAAGGAACGGGATGATGAACTGAGGGCTTCTTCTTCTGACGATGTGCCACCACCAAGTGCTGAAGAAATTGTCCAACTTTACGAACTACTATTGTCGGAGCTCACCTTCAATTCGAAGCCCATCATTACGGATCTTACCATCATCGCTGGAGAGCAGAGGGTGCACGGCAAGGGCATTGCTGATGCAATTTGCAACCGGATTCTCGAGGTCTCTGCGGAGCAAAAGCTTCCTTCGCTCTATCTTTTGGACAGTATTGTAAAGAATATTGGTCGGGATTATGTTAGATATTTCTCTTCACGTCTACCTGAAGTTTTTTGCGAGGCCTACAGGCAGGTTCAGCCTAATTTGCGTAATTCTATGCGTCATCTTTTTGGTACCTGGTCAACAGTGTTTCCAGCTTTTGTCCTGCGCAAGATTGAGGCTCAGCTGCAATTTTCTCAAGCAGCTAATCGTCAACCATCAACCACTAATCCTTTGAGGGTGTCTGAATCTTCTCGACCAACTCATGGCATACATGTTAATCCAAAATACTTGCGGCAGTTGGAGTCCTCAACTGTGGATAGTATTGGATTCTACAGAAGAAGCACAGTTGGAGCTAGTAAGATACATCCATCTTTAACTAGTAGGCTTGGAAGAGCCCCTTCCCCTTTATCAGCATCTATAGATGAGTATGCAGTTGAGAATTCTATTGTCAGGGCAGTTGATAGAGAATCCCCTTCGCATCCTGTGTTTGATTACGGACTAGGTAAAACTATAGGTAGAGATGAGGAGTTGAGTGAATGGCAGCGAAAACCCTATTCTGCTGATGGTTGTAATCGATTTCAAATTCCTAAAACACACAACCTTAATAATGGACTTCAACGTCAAAGCCCAAGAGCTCTGATTGATGCATATGGCAGTGACAAAAGGGCAGAAACTGCAAGCAATAGGCTGAATGTAAATAGCATAGACAAGGTGGTATCAACATCATGGCAGAATAGTGAAGAGGAGGAATTTGATTGGGAAGATATGAGTCCAACGTTAGTAGATCGAAATAGAAATAATGGTTTCCTGCCATCAGCTATTGGTCTTTCTAGGGAAAGACCTGGTTTTGTTGCAGCTAATGGAGCTTCTTTGGATCAAGATACCAGGAGCAATTGGTCAAGTCTGTCTCAACTTCCTGTAGTTGAAGATTCTTCTGTTATAGCAGATGATGTGATTGCCTCTTCGAGTTATGGTCGTGGATCGCTGGGTCAGGTATCTGGATTACAAACTAAGACAAATCAGAATCTGGGCCCTCGTCATCCTCATGATGCATGGAATATTTTGCATCAGTCTTCTAATTCTTCACAACGCCTTTTTAATAGTAGAGGGCGCCCAAGGAATATTCAGATGTCTCCTATTGATAACATTCCAAATGCTGAGGTAAAGCCGTATGGGATTCGGCCTTCTGTATCTAGAATGGGCACAACTGGTCTTGAGTCAAATGTGGAGGTTCATCCGCCAGTCTTGCCCTCACCATTCATGATGAGGCCTCCTATAAATGTTCATACAACTCGTCCACCCACCATAAAtccaaattttccttttcaaaagcATATTAGGAATCAGTTTGAGACAATAAATGCCAGTAACACCATTCTGAATCAAGGTCCAAATAAATCCCTGCTTGTGCCTGAACAGCAGTTGGATACCATTGAGAACAACGATCCAAGTAAATCAAAGCTAGTACAGTTACCTAATCCACTAGCTGCGCTGATTTCATTAAACCAGCAAAACCGTGGACATGTCACTACCTCACAAGGGCATGGTGCTGCAATAAGTACAGCCATGTCAAATACATTACCTGTTGTACAATTCCCTTTACCAGTGCCAAATATTGCAGATAACTCATTCCATTTACGGGGGGCAGCCTTGCCACCTTTACCTCCAGGTCTCCCTCCTGCTCCATCACAAATGATACCTCATCCAAATCCTAGCCCATTTGTATCAAGCCAACAGCCAGCTGGTGCATTTTCTGGTTTGATTGATTCTCTGATGGCTCAAGGTCTGATCTCCTTGAACAAACAATCTTCTGTACAGGATTCTGTTGGGACTGAGTTTAATCCTGATGTCCTGAAAGTTCGTCATGAGTCTGCCATCAGTGCCTTGTATACTGATCTTCCTAGACAATGCACAACCTGTGGCCTCCGATTTAAGTGCCAAGAGGACCACAGTAGTCATATGGATTGGCATGTGACAAAGAACCGAATGTCTAAAAGTCGTAAGCAGAAACCTTCTCGCAAGTGGTTTGTCAGTCAGAGAATGTGGCTTAGTGGTGCAGAAGCATTGGGGACCGAGGCTGCCCCTGGTTTTCTGCCTACTGAGACCatagaggaaaagaaagatgatGAAGAGTTGGCTGTTCCAGCTGACGAGGATCAGACTACATGTGCATTATGTGGAGAGccttttgaagaattttacaGTAATGAAACGGTGGAATGGATGTATAAAGGTGCTGTATACCTCAATGCACCCAAGGGAGAAACCGCAGGCATGGATAGGTCTCAGTTAGGTCCCATTATTCATGCCAAATGTAGATCAGAGTCTAATATTGTCCCCCCTGAAGATTTTAGACAGGACGAAGGGGGCTCCAATGATGAGGGTAGCCAAAGAAAACGAATGCGGAGTTA 2810 0.4374 MDSQKLSLSRENPRPLVFPTERVVSSANTKSMPVEIGQKPPPSILDRFKALLKERDDELRASSSDDVPPPSAEEIVQLYELLLSELTFNSKPIITDLTIIAGEQRVHGKGIADAICNRILEVSAEQKLPSLYLLDSIVKNIGRDYVRYFSSRLPEVFCEAYRQVQPNLRNSMRHLFGTWSTVFPAFVLRKIEAQLQFSQAANRQPSTTNPLRVSESSRPTHGIHVNPKYLRQLESSTVDSIGFYRRSTVGASKIHPSLTSRLGRAPSPLSASIDEYAVENSIVRAVDRESPSHPVFDYGLGKTIGRDEELSEWQRKPYSADGCNRFQIPKTHNLNNGLQRQSPRALIDAYGSDKRAETASNRLNVNSIDKVVSTSWQNSEEEEFDWEDMSPTLVDRNRNNGFLPSAIGLSRERPGFVAANGASLDQDTRSNWSSLSQLPVVEDSSVIADDVIASSSYGRGSLGQVSGLQTKTNQNLGPRHPHDAWNILHQSSNSSQRLFNSRGRPRNIQMSPIDNIPNAEVKPYGIRPSVSRMGTTGLESNVEVHPPVLPSPFMMRPPINVHTTRPPTINPNFPFQKHIRNQFETINASNTILNQGPNKSLLVPEQQLDTIENNDPSKSKLVQLPNPLAALISLNQQNRGHVTTSQGHGAAISTAMSNTLPVVQFPLPVPNIADNSFHLRGAALPPLPPGLPPAPSQMIPHPNPSPFVSSQQPAGAFSGLIDSLMAQGLISLNKQSSVQDSVGTEFNPDVLKVRHESAISALYTDLPRQCTTCGLRFKCQEDHSSHMDWHVTKNRMSKSRKQKPSRKWFVSQRMWLSGAEALGTEAAPGFLPTETIEEKKDDEELAVPADEDQTTCALCGEPFEEFYSNETVEWMYKGAVYLNAPKGETAGMDRSQLGPIIHAKCRSESNIVPPEDFRQDEGGSNDEGSQRKRMRS 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00470 936 CDD CID_Pcf11 76 196 - -
Bva13g00470 936 MobiDBLite consensus disorder prediction 906 936 - -
Bva13g00470 936 ProSitePatterns Zinc finger C2H2 type domain signature. 770 790 IPR013087 -
Bva13g00470 936 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 39 911 - -
Bva13g00470 936 MobiDBLite consensus disorder prediction 909 936 - -
Bva13g00470 936 MobiDBLite consensus disorder prediction 496 514 - -
Bva13g00470 936 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 39 911 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Bva13g00470 936 SUPERFAMILY ENTH/VHS domain 71 197 IPR008942 -
Bva13g00470 936 MobiDBLite consensus disorder prediction 22 42 - -
Bva13g00470 936 ProSiteProfiles CID domain profile. 71 199 IPR006569 -
Bva13g00470 936 Gene3D - 68 197 IPR008942 -
Bva13g00470 936 SMART 558neu5 74 196 IPR006569 -
Bva13g00470 936 Pfam CID domain 83 180 IPR006569 -
Bva13g00470 936 MobiDBLite consensus disorder prediction 496 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00470 Bva-Chr13 2146382 2152713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00470 708 936 C2H2 Transcription Factor Family AT4G04885 73.362 9.58e-111 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00470 K14400 - gmx:100794796 1179.08