Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00468 ATGTTTCAGCCAAACATATTTGAGACAATGCTGGATATGTCCCACTCCCACAGGACATCCTCTGAGAGTGATTTAGGAAGGACCAACAAGGATGATGATTATGAGAGCAAATCAGGCACTGAGACCATGGATGCTCCTTCTGGTGACGACCAAGTTCCCAACCAGAGACCCAAAAGGAAGCGCTACCACCGCCACACCCAGCACCAAATACAAGAATTAGAAGCCTTCTTCAGGGAGTGCCCTCATCCAGATGACAAGCAAAGGAAAGAACTTAGCCGGGAGCTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAGATGAAGgctcAGCATGAACGCCATGAGAATTCTATTCTCAAGGCTGAGAATGAAAAGCTTCGCGCTGAGAACAACAGGTACAAGGAAGCCCTAAGTAATGCCAGCTGGCCCAACTGTGGAGGTCCAGCTTCTCTCGGTGAAATGTCCTTTGACGAGCAGCACTTGAGGATTGAGAATGCTCGTTTAAGAGAAGagATTGATAGGATATCAGGGATTGCGGCCAAATATGTTGGAAAACCCGTGACTTCCTTCTCCAACCTTTCACCCCGTGTGTCTTCTGGCTCTCTTGATGTTGGGGTTGGTAACTATGGCGCACAATCAGGCATGTTAGGGGAAATGTATGGAGCTAGCAGTGACCTTCTTAGGTCACTTCCAATTCCCAATGAAGCAGACAAACCCATGATTGTAGAGCTAGCTGTTGCGGCAATGGAGGAACTAATGAGACTAGCTCAGGCTGGAGAGCCTTTATGGGTCCCAAATGACCACTCCACTGAGATTCTGAATGAAGAAGAATACTTGAGGACAATCCCTAGAGGAATTGGTCCCAAACCCTTGGGGCTAAAATCTGAAGCTTCAAGAGAGACCGCGGTGGTCATTATGAATCATATTAGCCTCGTCGAGATTCTCATGGATGTGAATCAATGGTCAACTGTGTTCTGTGGCATTGTTTCGAGAGCATTGACACTAGAAGTCCTCTCAACTGGAGTGGCAGGAAATTATAACGGAGCCTTGCAAGTGATGTCAGCTGAGTTCCAGGTGCCTTCACCACTTGTTCCTACTCGTGAGAACAATTTTGTGAGGTACTGTAAGCAGCACCCAGATGGGACATGGGCGGTGGTTGATGTTTCCTTGGATAACCTTCGTCCAAGTCCAACATCCtcaagaagcagaagaagGCCTTCTGGCTGTATAATTCAAGAATTGCCAAATGGTTACTCCAAGATTACATGGATTGAGCATGTAGAAGTGGATGATAGATCTgtacacaatatatataggCCTCTTGTTAATTCTGGCCTTGCCTTTGGAGCCAAACGGTGGCTGGCTACATTAGAGAGGCAATGTGAACGTCTTGCTAGCTCCATGGCCAGCAACATACCTGCAGGAGACCTGTGTGATGCAGTGATAACCAGTACCGAGGGTAGGAAAAGTATTCTGAAGCTGACAGAAAGAATGATGATGAGCTTTCGTACTGGTGTTGGTGCTTCGACAGCACATGCTTGGACAACGCTACCATCAACAGGGTGTGATGATGTAAGGGTCATGACCAGGAAGAGTACGGATGACCCAGGAAGACCATCTGGTATAGTGCTCTGTGCTGCTACTTCCTTCTGGCTCCCGGTTCCTCCAAATAGGGTTTTCGATTTCCTTCGAGATGAAAACTGCAGAAGTGAGtGGGATATTCTCTCTAATGGTGGTCTAGTTCAAGAAATGGCACACATAGCAAATGGTAGGGATCCAGGCAACTGTGTCTCGTTACTTCGCGTAAATAGTGTGAATTCCAGTCAAAGTAACATGCTGATACTTCAAGAGAGTGGCACTGACTCTACAGCCTCATATGTAGTGTATGCTCCGGTTGATATTTCTGCCATGAATGTGGTCTTAGGCGGCGGGGACCCAAGTTATGTTGCTCTACTTCCCTCAGGTTTTGCTATTCTTCCTGATGGGCCTGCAGGACTAAATGGAGGACCTAttcttgatgttggatctggaGGTTCTTTATTGACAGTTGCATTTCAGATCTTAGTTGATTCATTGCCAACGGCTAAACTTTCTGTAAGTTCAGTGGCCACTGTTAACAGTTTAATTAAGTGCACAGTTGAAAGGATCAAAGCTGCAGTGATGTGTGAGAGTACAGCACATATTTG 2204 0.4546 MFQPNIFETMLDMSHSHRTSSESDLGRTNKDDDYESKSGTETMDAPSGDDQVPNQRPKRKRYHRHTQHQIQELEAFFRECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHENSILKAENEKLRAENNRYKEALSNASWPNCGGPASLGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPVTSFSNLSPRVSSGSLDVGVGNYGAQSGMLGEMYGASSDLLRSLPIPNEADKPMIVELAVAAMEELMRLAQAGEPLWVPNDHSTEILNEEEYLRTIPRGIGPKPLGLKSEASRETAVVIMNHISLVEILMDVNQWSTVFCGIVSRALTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENNFVRYCKQHPDGTWAVVDVSLDNLRPSPTSSRSRRRPSGCIIQELPNGYSKITWIEHVEVDDRSVHNIYRPLVNSGLAFGAKRWLATLERQCERLASSMASNIPAGDLCDAVITSTEGRKSILKLTERMMMSFRTGVGASTAHAWTTLPSTGCDDVRVMTRKSTDDPGRPSGIVLCAATSFWLPVPPNRVFDFLRDENCRSEWDILSNGGLVQEMAHIANGRDPGNCVSLLRVNSVNSSQSNMLILQESGTDSTASYVVYAPVDISAMNVVLGGGDPSYVALLPSGFAILPDGPAGLNGGPILDVGSGGSLLTVAFQILVDSLPTAKLSVSSVATVNSLIKCTVERIKAAVMCESTAHI 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00468 734 SMART START_1 249 469 IPR002913 GO:0008289
Bva13g00468 734 Coils Coil 110 145 - -
Bva13g00468 734 SUPERFAMILY Homeodomain-like 43 116 IPR009057 -
Bva13g00468 734 SUPERFAMILY Bet v1-like 241 471 - -
Bva13g00468 734 Gene3D - 316 474 IPR023393 -
Bva13g00468 734 Gene3D - 47 132 - -
Bva13g00468 734 ProSiteProfiles START domain profile. 240 472 IPR002913 GO:0008289
Bva13g00468 734 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Bva13g00468 734 CDD START_ArGLABRA2_like 244 468 - -
Bva13g00468 734 Pfam Homeodomain 59 114 IPR001356 GO:0003677
Bva13g00468 734 MobiDBLite consensus disorder prediction 13 67 - -
Bva13g00468 734 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Bva13g00468 734 Pfam START domain 250 469 IPR002913 GO:0008289
Bva13g00468 734 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 19 728 IPR042160 -
Bva13g00468 734 MobiDBLite consensus disorder prediction 15 39 - -
Bva13g00468 734 SUPERFAMILY Bet v1-like 502 723 - -
Bva13g00468 734 CDD homeodomain 58 117 IPR001356 GO:0003677
Bva13g00468 734 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN-RELATED 19 728 - -
Bva13g00468 734 SMART HOX_1 57 120 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00468 Bva-Chr13 2135078 2140738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00468 1 729 Homeobox Transcription Factor Family AT4G04890 77.554 0.0 1160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva13g00468 START 5e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00468 K09338 - qsu:112016283 1211.82