Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00457 ATGGATGTGTTTTTTGATCTCCAGAGAGGAAGGTCATTCTGCATTGAAGTTGGGTATTTTGATACGGTACTCGAGATCAAAGAGAAGATACACAAGTACCAGTATATACCCGTTTCCAAACAAACCTTGATCTTCAATGGCCAAGTTCTACAAGACGACGCCGACGTCGACAAGTGTGTTATCCTTCACAACTCCCGCATTCAACTCGTTGTTGCCTCTGATAATTCCGATAAACCCCCCGTCAAGACGGAGCAGCCGTCGCCCTCACCCTCGCCGCCCAAAACTAAACTCCAGCTCCTTGTTAAAATCCCTTGGTCTAAAATGCATGTCCCTGTAGAAATGGACCTCAACGACACCGTTTTGAGGCTGAAGGAGAGGATTCAGGAAATGGAAGGAGCGCCAGTTCAAAAGTTGGTCATTCATGCAACTGGTGCAGAATTGCATGACCAACAACTGCTACGTGATTGTGAGGTTTCAGATAATTCTGAGATCGACGTGAGTTGTAGATCGTCACCCCCTAATTCAGTGGCGGTGCCGGCAGGTGGTGGTGGCGGCGGAGGAGGAGTAGAAGGGCCGTCGTCGAAGAAGTTGAAACTGATGGTGTTGCCTAAATGTGGGACAAAGAAGATACCAGTGGAAGTGAATGGTTCGGATAACGTGGGAGAGTTGAGGAAGGAATTGCAGAAGTTGCACCAGAGGCTTCAATTTCATCTTCCCCAAGAGGgctattttttcatttataagcaGAATGTTATGGATGATGATAGAGAAAACCGAGAATACTCCTTCAAGATGCAAATTTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTCGAGAGTTCTGACACCATCGACAACGTCAAGGCTAAAATTCAGGACAAGGAAGGGATTCCCCCAGACCAGCAGCGTCTGATATTCGCCGGCAAGCAACTTGAGGACGGCCGAACCCTCGCCGACTACAACATCCAGAAGGAATCCACCCTTCACCTCGTCCTACGTCTGCGTGGTGGTATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGAGCTCTGATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCAGACCAGCAAAGGTTGATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGTACCTTGGCTGATTATAACATCCAAAAGGAGTCCACCCTTCACCTTGTCCTCCGTCTCCGTGGTGGTATGCAAATCTTCGTCAAGACCCTTACAGGGAAGACCATCACCCTTGAAGTGGAGAGCTCTGACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAGCAGAGGTTGATCTTCGCCGGGAAGCAGCTTGAGGATGGCCGCACCTTGGCTGACTATAACATCCAGAAGGAGTCAACTCTCCACCTTGTCCTGCGTCTCCGTGGTGGTATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACAATTACTCTTGAGGTTGAGAGCTCCGACACAATTGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCAGACCAGCAGAGGTTGATCTTCGCTGGTAAGCAGCTCGAAGATGGGCGTACCCTTGCAGACTACAACATTCAGAAGGAGTCCACCCTCCACCTTGTGCTTCGTCTCAGGGGAGGCATGCAGATTTTTGTTAAGACCTTGACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCAGACACCATTGACAATGTCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCCCCAGACCAGCAGAGGTTGATCTTCGCAGGAAAGCAGTTGGAGGATGGAAGAACCCTTGCCGATTATAACATTCAGAAGGAGTCAACCCTTCACCTTGTGCTGCGTCTCCGTGGTGGATTCTA 1937 0.4925 MDVFFDLQRGRSFCIEVGYFDTVLEIKEKIHKYQYIPVSKQTLIFNGQVLQDDADVDKCVILHNSRIQLVVASDNSDKPPVKTEQPSPSPSPPKTKLQLLVKIPWSKMHVPVEMDLNDTVLRLKERIQEMEGAPVQKLVIHATGAELHDQQLLRDCEVSDNSEIDVSCRSSPPNSVAVPAGGGGGGGGVEGPSSKKLKLMVLPKCGTKKIPVEVNGSDNVGELRKELQKLHQRLQFHLPQEGYFFIYKQNVMDDDRENREYSFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00457 645 CDD Ubl_ubiquitin 417 492 - -
Bva13g00457 645 ProSiteProfiles Ubiquitin domain profile. 265 340 IPR000626 GO:0005515
Bva13g00457 645 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Bva13g00457 645 CDD Ubl_ubiquitin_like 3 70 - -
Bva13g00457 645 Gene3D - 83 175 - -
Bva13g00457 645 PANTHER UBIQUITIN 417 623 - -
Bva13g00457 645 PANTHER UBIQUITIN 544 644 - -
Bva13g00457 645 ProSiteProfiles Ubiquitin domain profile. 417 492 IPR000626 GO:0005515
Bva13g00457 645 SUPERFAMILY Ubiquitin-like 198 263 IPR029071 -
Bva13g00457 645 SUPERFAMILY Ubiquitin-like 1 92 IPR029071 -
Bva13g00457 645 ProSiteProfiles Ubiquitin domain profile. 97 173 IPR000626 GO:0005515
Bva13g00457 645 ProSitePatterns Ubiquitin domain signature. 367 392 IPR019954 -
Bva13g00457 645 ProSiteProfiles Ubiquitin domain profile. 341 416 IPR000626 GO:0005515
Bva13g00457 645 CDD Ubl_ubiquitin 569 644 - -
Bva13g00457 645 Gene3D - 341 416 - -
Bva13g00457 645 Gene3D - 417 492 - -
Bva13g00457 645 Gene3D - 569 645 - -
Bva13g00457 645 Gene3D - 493 568 - -
Bva13g00457 645 Gene3D - 257 340 - -
Bva13g00457 645 ProSitePatterns Ubiquitin domain signature. 595 620 IPR019954 -
Bva13g00457 645 MobiDBLite consensus disorder prediction 73 95 - -
Bva13g00457 645 Pfam Ubiquitin family 419 490 IPR000626 GO:0005515
Bva13g00457 645 Pfam Ubiquitin family 3 72 IPR000626 GO:0005515
Bva13g00457 645 Pfam Ubiquitin family 571 642 IPR000626 GO:0005515
Bva13g00457 645 Pfam Ubiquitin family 267 338 IPR000626 GO:0005515
Bva13g00457 645 Pfam Ubiquitin family 100 169 IPR000626 GO:0005515
Bva13g00457 645 Pfam Ubiquitin family 495 566 IPR000626 GO:0005515
Bva13g00457 645 Pfam Ubiquitin family 343 414 IPR000626 GO:0005515
Bva13g00457 645 PANTHER UBIQUITIN 13 544 644 - -
Bva13g00457 645 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Bva13g00457 645 ProSitePatterns Ubiquitin domain signature. 519 544 IPR019954 -
Bva13g00457 645 SUPERFAMILY Ubiquitin-like 492 568 IPR029071 -
Bva13g00457 645 CDD Ubl_ubiquitin 341 416 - -
Bva13g00457 645 Gene3D - 1 73 - -
Bva13g00457 645 SMART ubq_7 265 336 IPR000626 GO:0005515
Bva13g00457 645 SMART ubq_7 341 412 IPR000626 GO:0005515
Bva13g00457 645 SMART ubq_7 97 169 IPR000626 GO:0005515
Bva13g00457 645 SMART ubq_7 417 488 IPR000626 GO:0005515
Bva13g00457 645 SMART ubq_7 493 564 IPR000626 GO:0005515
Bva13g00457 645 SMART ubq_7 1 72 IPR000626 GO:0005515
Bva13g00457 645 SMART ubq_7 569 640 IPR000626 GO:0005515
Bva13g00457 645 PANTHER UBIQUITIN 262 471 - -
Bva13g00457 645 CDD Ubl_ubiquitin 493 568 - -
Bva13g00457 645 ProSitePatterns Ubiquitin domain signature. 291 316 IPR019954 -
Bva13g00457 645 MobiDBLite consensus disorder prediction 164 193 - -
Bva13g00457 645 PANTHER UBIQUITIN 13 1 165 - -
Bva13g00457 645 PANTHER UBIQUITIN 13 262 471 - -
Bva13g00457 645 PANTHER UBIQUITIN 13 339 547 - -
Bva13g00457 645 SUPERFAMILY Ubiquitin-like 340 416 IPR029071 -
Bva13g00457 645 PRINTS Ubiquitin signature 275 295 IPR019956 -
Bva13g00457 645 PRINTS Ubiquitin signature 317 338 IPR019956 -
Bva13g00457 645 PRINTS Ubiquitin signature 296 316 IPR019956 -
Bva13g00457 645 PANTHER UBIQUITIN 13 417 623 - -
Bva13g00457 645 SUPERFAMILY Ubiquitin-like 416 492 IPR029071 -
Bva13g00457 645 SUPERFAMILY Ubiquitin-like 264 340 IPR029071 -
Bva13g00457 645 SUPERFAMILY Ubiquitin-like 91 173 IPR029071 -
Bva13g00457 645 ProSiteProfiles Ubiquitin domain profile. 569 644 IPR000626 GO:0005515
Bva13g00457 645 SUPERFAMILY Ubiquitin-like 568 644 IPR029071 -
Bva13g00457 645 ProSiteProfiles Ubiquitin domain profile. 493 568 IPR000626 GO:0005515
Bva13g00457 645 CDD Ubl_ubiquitin_like 99 166 - -
Bva13g00457 645 ProSitePatterns Ubiquitin domain signature. 443 468 IPR019954 -
Bva13g00457 645 CDD Ubl_ubiquitin 265 340 - -
Bva13g00457 645 PANTHER UBIQUITIN 1 165 - -
Bva13g00457 645 PANTHER UBIQUITIN 339 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00457 Bva-Chr13 2100136 2104437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00457 569 645 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 3.13e-45 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00457 - K08770 ini:109185864 782.711