Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00404 ATGCCTCTTTCGCCGGAACGCTCCGCCGACGATAGCTTGGTCTGCGGCGAGGACGCTGGTGAGGTGGTCTCCTCTGATTCGTCGATCTTCCACGGCATTTCGCCTGCATCGTTGCCGCTCGATTCTCCACCATCCGATGAGACCATCATTGACGGACTCTTCGAAACGGAGAGCCATCACATGCCCAACCCAGATTACCTACAGAGATGCCGTGACCGTTCAATCGACGTCACCGCTCGTCTAGACTCCATCAATTGGATGTTAAAGGTTCACGCACACTATCAATTTCGGCCAGTGACGGCGTTTCTCTCCGTCAATTATCTCGACCGTTTCCTCTCCTGCACTACACTTCCTCATTGGAGTGAGTGGGCGTTTCAGCTTCTATCACTAGCTTGTTTGTCTCTAGCGGCGAAAATGGAAGAACCCCAAGTCCCACTCTTTCTGGACCTTCAATTGTTCGAACCCAGATTCGTATTCGAACCCAAAACGGTTCAGAGAATGGAGCTCTGGGTCATGGCAAACCTTAGCTGGAGATTACGCTCTGTCACACCCTTCGACTACCTCGACTATTTCATCTCCAGGCTTCTTTCTTCATCCAACACACAATCCAAATCCCCGAACCGCTTCTTTTCAGCTGTCTCCGACTTGATCCTCAGCACTACCGGCGTGGTCGATTTCTTGGGCTTTGCGCCGTCTACCATCGCGGCCGCTGCTCTGCTCTGTTCAGCTGGCAAAGCCTATGATGTTTCAGAGAACGGCCAATCGCAGCAGTTTTTTCACCCGAGAGTAAACAAAGAAATGGTGAGAAGCTGTCACCAACTAATGAAAGAGTACGTGGTGGCCACGTGTCCCGCAGCTCGCTCTGAAGGCCAGGGAGCCGTGGCCGCCGCCCCGCCGCCTACAAGCCCTATGGGAGTGTTGGACGCCGCTACTTGTTGGAGCTGCGACACGCGTTCCGATAACCCAAGCTCATCAAGCGGCCAAGCCGATCTTGAGCCGGCCAACAAGCGGCTTCGATTCTCTGCTCCGGATGTACAGCAGCGGTA 1046 0.5402 MPLSPERSADDSLVCGEDAGEVVSSDSSIFHGISPASLPLDSPPSDETIIDGLFETESHHMPNPDYLQRCRDRSIDVTARLDSINWMLKVHAHYQFRPVTAFLSVNYLDRFLSCTTLPHWSEWAFQLLSLACLSLAAKMEEPQVPLFLDLQLFEPRFVFEPKTVQRMELWVMANLSWRLRSVTPFDYLDYFISRLLSSSNTQSKSPNRFFSAVSDLILSTTGVVDFLGFAPSTIAAAALLCSAGKAYDVSENGQSQQFFHPRVNKEMVRSCHQLMKEYVVATCPAARSEGQGAVAAAPPPTSPMGVLDAATCWSCDTRSDNPSSSSGQADLEPANKRLRFSAPDVQQR 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00404 348 MobiDBLite consensus disorder prediction 317 348 - -
Bva13g00404 348 Gene3D - 53 272 - -
Bva13g00404 348 SMART Cyclin_C_2 182 300 IPR004367 -
Bva13g00404 348 PANTHER CYCLINS 34 324 IPR039361 -
Bva13g00404 348 SMART cyclin_7 85 173 IPR013763 -
Bva13g00404 348 Pfam Cyclin, C-terminal domain 182 279 IPR004367 -
Bva13g00404 348 MobiDBLite consensus disorder prediction 317 331 - -
Bva13g00404 348 SUPERFAMILY Cyclin-like 41 179 IPR036915 -
Bva13g00404 348 CDD CYCLIN 80 121 IPR013763 -
Bva13g00404 348 PANTHER CYCLIN-D2-1-LIKE 34 324 - -
Bva13g00404 348 Pfam Cyclin, N-terminal domain 49 179 IPR006671 -
Bva13g00404 348 ProSitePatterns Cyclins signature. 80 111 IPR006671 -
Bva13g00404 348 Gene3D - 63 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00404 Bva-Chr13 1870704 1873031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00404 1 280 Core Cell Cycle Gene Families AT1G70210 42.403 9.84e-65 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00404 K18810 - jre:109009685 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00404 13 1870704 1873031 Bva13g00404 13 1870704 1873031 ECH
Bva13g00404 13 1870704 1873031 Bva14g00491 14 2353386 2355623 ECH