Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00402 ATGGGTGCTCCAAAGCAGAAATGGAcagcagaagaagaagcagcCCTTAAAGCTGGAGTTGTTAAGCATGGGGCTGGGAGATGGCGTACAATACTTAAGGACCCAGAATTCAGTAGTGTGCTGTACCTGCGGTCAAATGTTGATCTAAAGGATAAATGGAGAAATATGAGTGTAATGACGAATGGGTGGAGCTCCAGGGACAAGTCCAGGTTAGCTGTTAGAAGGGTACATCATATCTCCAAACAGGATGAGAACTCTATGGCTCTCGCTACTGTTCCAAGTGATGAAGAAATTACAGATGTTCAGCCTCTTCAAGTTGAAAGAGAGTTGGTGCAGCTTCCTGGTCCAAAGAGGTCTATTGTAAGATTGGATAACCTTATAATGGAAGCAATAACTAACTTGAAGGAGCCTGGTGGTTCCAATAAGACAACCATTGCAGCATACATGGAGGATCAATATTGGGCACCCTCAGACTTCAAAAGGTTATTATCAGCAAAACTAAAGTTTTTGATGGCAAGTGGAAAACTGATCAAGGTAAAACGCAGGTATAGGATTGCACCTACTCCGATTTATTCTGACAGAAGAAGAAACCCACCCGTGTTATTATTGGATGGAAAGCAGAGAGCttctatgaaatttgaaaaggaTGAGGCTAATATCCCCACAGTTACGAAAGCTCAGATAGATTTAGAATTAGAAAAGATGAGATCTATGACTTCGCAAGAGGCAGCTATAGTTGCTGCTCGGGCAgttgcagaagcagaagctgCCATGGCAGAAGCTGAAGAGGCTGCACGGGAGGCAGAGGCTGCTGAAGCTGATGCAGAGACAGCGCAAGCTTTTGCTGATGCTGCATTGAAAACATTGAAAGGGCGAAACACCCCAAAGATGATAATCCGAGCTTG 905 0.4144 MGAPKQKWTAEEEAALKAGVVKHGAGRWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMTNGWSSRDKSRLAVRRVHHISKQDENSMALATVPSDEEITDVQPLQVERELVQLPGPKRSIVRLDNLIMEAITNLKEPGGSNKTTIAAYMEDQYWAPSDFKRLLSAKLKFLMASGKLIKVKRRYRIAPTPIYSDRRRNPPVLLLDGKQRASMKFEKDEANIPTVTKAQIDLELEKMRSMTSQEAAIVAARAVAEAEAAMAEAEEAAREAEAAEADAETAQAFADAALKTLKGRNTPKMIIRA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00402 301 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva13g00402 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Bva13g00402 301 SMART sant 4 59 IPR001005 -
Bva13g00402 301 Pfam linker histone H1 and H5 family 124 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva13g00402 301 Gene3D - 2 59 - -
Bva13g00402 301 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Bva13g00402 301 SUPERFAMILY "Winged helix" DNA-binding domain 116 197 IPR036390 -
Bva13g00402 301 Gene3D - 117 193 IPR036388 -
Bva13g00402 301 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Bva13g00402 301 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 297 - -
Bva13g00402 301 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva13g00402 301 PANTHER SINGLE MYB HISTONE 4 1 297 IPR044597 GO:0003691
Bva13g00402 301 CDD SANT_TRF 6 56 - -
Bva13g00402 301 Coils Coil 244 281 - -
Bva13g00402 301 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00402 Bva-Chr13 1858198 1862702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00402 1 301 Single Myb Histone (SMH) Gene Family AT1G49950 65.909 2.77e-103 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva13g00402 Linker_histone 6.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00402 K09422 - jre:108979731 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00402 13 1858198 1862702 Bva13g00402 13 1858198 1862702 ECH