Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00379 ATGGCAACTGTCCTCCCGCCGGCACCGGGCCGAGAACTCTCTAACCCTCCGTCTGATGGCATCTCGAACCTTCGGTTCTCCAACCACAGTGATCATCTGCTTGTCTCCTCATGGGATAAGAGTGTGCGACTGTACGATGCGAGCGCCAATGTGCTCAGAGGAGAGTTCATGCACGGTGGACCAGTACTTGACTGTTGCTTCCATGACGATTCTTCGGGATTCAGTGCTGGAGCGGATAACACGGTGAGGCGGCTCGTCTTCAGCTCTAATAAGGAGGATATTCTGGGAAAGCATGATGCACCTGTTCGTTGTGTCGAGTACTCCTATGCAGCAGGACAATTGATTACTGGTAGTTGGGACAAAACCCTAAAATGCTGGGACCCTAGAGGTGCAAGTGGGCAGGAACGCACTCTTGTTGGGACTTATTCTCAACCTGAGCGTGTTTATTCACTCTCTCTTGTTGGACATCGTCTCGTCGTGGCAACAGCAGGAAGACATGTTAATGTCTATGATTTAAGGAATATGTCTCAACCTGAGCAACGTAGGGAATCTTCATTGAAATATCAAACCAGATGTGTGCGCTGTTACCCAAATGGAACAGGATATGCACTTAGTTCTGTTGAAGGGCGAGTTGCAATGGAATTTTTTGATCTCTCCGAGGCTAGCCAAgcaaaaaaATATGCTTTTAAATGTCACAGGAAATCAGAAGCTGGACGGGACTATGTCTATCCTGTCAATGCTATTGCATTCCACCCCATATATGGTACATTTGCCACTGGAGGTTGTGATGGCTTTGTGAACGTATGGGATGGAAACAACAAGAAAAGACTGTACCAGTACTCAAAATACCCAACTAGCATTGCTGCTCTTTCATTTAGCAGAGATGGACGCCTTCTGGCTGTTGCATCTAGTTATACATTTGAAGAGGGGGATAAACCCCATGAACCCGATGCTATTTATGTGCGCAGTGTAAATGAAATAGAGGTGAAACCAAAGCCTAAGGTCTATCCCAATCCTCCAGCCTG 1025 0.4683 MATVLPPAPGRELSNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSAGADNTVRRLVFSSNKEDILGKHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYSQPERVYSLSLVGHRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDYVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIYVRSVNEIEVKPKPKVYPNPPA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00379 341 SMART WD40_4 6 46 IPR001680 GO:0005515
Bva13g00379 341 SMART WD40_4 135 171 IPR001680 GO:0005515
Bva13g00379 341 SMART WD40_4 222 270 IPR001680 GO:0005515
Bva13g00379 341 SMART WD40_4 49 86 IPR001680 GO:0005515
Bva13g00379 341 SMART WD40_4 88 127 IPR001680 GO:0005515
Bva13g00379 341 PANTHER MRNA EXPORT FACTOR AND BUB3 5 336 - -
Bva13g00379 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Bva13g00379 341 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 5 336 - -
Bva13g00379 341 Pfam WD domain, G-beta repeat 229 270 IPR001680 GO:0005515
Bva13g00379 341 Pfam WD domain, G-beta repeat 19 46 IPR001680 GO:0005515
Bva13g00379 341 Pfam WD domain, G-beta repeat 95 127 IPR001680 GO:0005515
Bva13g00379 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Bva13g00379 341 SUPERFAMILY WD40 repeat-like 16 304 IPR036322 GO:0005515
Bva13g00379 341 Gene3D - 8 335 IPR015943 GO:0005515
Bva13g00379 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 279 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00379 Bva-Chr13 1763674 1767014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00379 95 303 U-box Gene Family AT2G33340 25.352 8.02e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00379 K02180 - jre:108979744 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00379 13 1763674 1767014 Bva13g00379 13 1763674 1767014 ECH