Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00368 ATGGTTGATACTTTGCATGAAGTGCATCATAGGGGTGCTGCGGTTGTTGCTTCTCCAAAGAGGGATATTGTGGTGTTTGAAGAGGACAAAGATTTTGAGCCGCACAGTGgtattgaatttgaatctcATGAAGCAGCATATTCATTCTATCAAGAATATGCCAAGTCTATGGGGTTCACAACTTCAATCAAAAACAGCAGGCggtcaaagaaaacaaaagaatttattgATGCCAAATTTGCGTGCTCTAGGTATGGAGTTACACCTGAGTCAGATGGTGGAAGTAGTCGAAGACCAAGTGTAAAGAAGACAGATTGCAAAGCGTGCATGCATGTGAAGAGAAGGCCAGATGGGAAGTGGATAATTCATGAATTCATAAAGGATCATAACCATGAACTACTACCTGCTTTGGCATATCATTTTCGTATTCATAGAAATGTGAAGCTAGctgaaaagaataatattgatattttgcATGCTGTGAGTGAACGCACCAGAAAGATGTATGTTGAAATGTCTAGGCAATCTGGCGGCTGTCTAAATATTGGGTCTCTCGAGGGTGACATAAACCATCAGTTTGATAGAGGGCAGTATTTGGCTTTGGATGAGGGAGATGCCCAAGTTattcttgaatattttaagagaattaaaaAGGAGAATCCCAACTTCTTCTATGCTATAGATTTGAATGAAGAGCAACgtttgagaaatttattttgggtTGATTCCAAAAGTAGGAATGATTACACCGGCTTTAATGATGTAGTTTCATTTGACACCACTTACAtaaaaaacaatgataaaCTGCCGTTTGCTCCTTTTGTCGGAGTAAACCATCATTGTCAACCCATATTGCTCGGATGTGCACTGGTTGCAGATGAAACTAAACCAACATATGCTTGGTTACTGAAGACATGGCTTAGAGCAATGGGTGGGCGAGCTCCCAAAGTCATAATCACTGATCAAGACAAAGCCTTGAAGACAGCAGTTGAAGAAGTCTTCCCAAATGTACATCATTGCTTTCCACTTTGGAACATATTCGAAAAGATACCTGAAAATCTTTCGAGTGTGATCAAACAGTACAAGAACTTTCTGCCAAAGTTTAACAAGTGCATTTTTAAATCTTGGACAGATGAGCAGTTTGATATGAGATGGTGGAAAATGGTGACTAGATTTGAACTCCAAGACGATATATGGTTTCAATCATTGTATGAAGACCGGAAAAAGTGGGTCCCTACTTATATGGGGGATATCTTTTTAGCTGGAATGTCTACACCTCAACGTTCTGAAAGTATGAACTCGTTCTTTGACAAATACATTCATAAGAAAATCACCCTTAAAGAGCTTGTGAAACAATATGGCACAATTCTTCAGAATAGGTATGAAGAAGAAGCTATTGCTGATTTTGATACATTGCACAAACAGCCAGCACTGAAGTCTCCTTCGCCCTGGGAAaaacaaatgtcaacaatTTATACGCATacaattttcaagaaattcCAAGTTGAAGTTTTGGGTGTAGTTGGCTGTCATCCTAGAAGAGAGGGTGGAGACGGAACGATTGCAAAATTCATAGTTCAAGATTGTGAGAAGGATGAGGAGTTTTTGGTAACTTGGAACGAGATGAAGTCGGAGGTCTCTTGCTTTTGTAGAATGTTTGAATACAAAGGTTTCCTTTGCAGACATGCATTGAATGTTCTCCAACTTTGTGGTTGTTCAAGTATTCCATCACATTATATATTGAAGAGGTGGACCAAAGATGCAAAAAGTATTCAATCCATGGTAGACGCAACTATAAAGATACAAACTAGGCCAGCACGTTATAATGACTTGTGTAAACAAGCTATTGAATTGAGTGAGGAAGGATCATTATCTGAAGAGAGTTACAACATTGTTTTTCGTGCATTTGTTGATGCTCTGAAGAACTGTGTACATGTGAATAACTCTAAAAGTAACAATGCAGAAACTAGCAAGAATACTTATGGCCTTCGTGAAGCAGAAGAAGTAAACCAGGGTATCCTTGCTGTAAAACCAACTAAGAAAAGGACCtcaacaaggaaaagaaagGTACAATTAGAGCCAGATGTTATGCTTGTTGATGCACAGGACAGCCTGCAGCAAATGGATAATCTAAGCTCAGATGCAATAACCCTTAGTGGATATTATGGTACTCAGCAGAATGTGCAAGGACTGCAAGTACAGTTGAACTTAATGGAGCCACCTCATGATGGTTACTATGTTAATCAACAAAGCATGCAAAACTTGGGCCATTTGAGTTCCATGGCACCAAATCATGATGGATTTTTCGGGACACAGCAAAGCATTCATGGGCTGGGACCATTGGAATTTCGTCCACCAACTACTTTTGGGTATAGCCTGCAGGATGAGCCCGATCTGAGATCTGCTCAGTTCCATGGAAATAGTTCTCGTGATAGTTA 2438 0.3749 MVDTLHEVHHRGAAVVASPKRDIVVFEEDKDFEPHSGIEFESHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDGGSSRRPSVKKTDCKACMHVKRRPDGKWIIHEFIKDHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKMYVEMSRQSGGCLNIGSLEGDINHQFDRGQYLALDEGDAQVILEYFKRIKKENPNFFYAIDLNEEQRLRNLFWVDSKSRNDYTGFNDVVSFDTTYIKNNDKLPFAPFVGVNHHCQPILLGCALVADETKPTYAWLLKTWLRAMGGRAPKVIITDQDKALKTAVEEVFPNVHHCFPLWNIFEKIPENLSSVIKQYKNFLPKFNKCIFKSWTDEQFDMRWWKMVTRFELQDDIWFQSLYEDRKKWVPTYMGDIFLAGMSTPQRSESMNSFFDKYIHKKITLKELVKQYGTILQNRYEEEAIADFDTLHKQPALKSPSPWEKQMSTIYTHTIFKKFQVEVLGVVGCHPRREGGDGTIAKFIVQDCEKDEEFLVTWNEMKSEVSCFCRMFEYKGFLCRHALNVLQLCGCSSIPSHYILKRWTKDAKSIQSMVDATIKIQTRPARYNDLCKQAIELSEEGSLSEESYNIVFRAFVDALKNCVHVNNSKSNNAETSKNTYGLREAEEVNQGILAVKPTKKRTSTRKRKVQLEPDVMLVDAQDSLQQMDNLSSDAITLSGYYGTQQNVQGLQVQLNLMEPPHDGYYVNQQSMQNLGHLSSMAPNHDGFFGTQQSIHGLGPLEFRPPTTFGYSLQDEPDLRSAQFHGNSSRDS 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00368 812 Pfam SWIM zinc finger 544 570 IPR007527 GO:0008270
Bva13g00368 812 Pfam MULE transposase domain 255 348 IPR018289 -
Bva13g00368 812 SMART 26again6 546 573 IPR006564 GO:0008270
Bva13g00368 812 Pfam FAR1 DNA-binding domain 48 135 IPR004330 -
Bva13g00368 812 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 10 725 - -
Bva13g00368 812 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 10 725 IPR031052 GO:0006355
Bva13g00368 812 ProSiteProfiles Zinc finger SWIM-type profile. 535 571 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00368 Bva-Chr13 1714645 1719249 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Bva13g00368 MULE 1.5e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00368 - - lang:109346405 1406.73