Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00365 ATGACGAGCGCTTCGGAGCTATTCTATACTAGGAGGCATCGTTTGGGACGATCTACGAATGATATAGGGTTTGATTCCTCTTCCGCTCGAGACCTCATTTTCAATAACCGTCgccatcatcttcatcatcgtCGACATGATTTGGACGATGGTGAGGCTTTGCGACGGGCCACGCATATGCGGCAGCCCTGTCGCCGCGGCTCCCAATCCCATGCGGAGCATGCAATTGGTCGACTTGACATCGGTTCTAGCTGGTCTCTCTCAAGGAACAGCATCAATGTTGCAGAGAATGTAAGTGGTGTAAGCAGTCCTAGGGCGACCGGGACTGAAAGACTGCCCACAGCTGTGATGCTTGCGAGGGCAAGACTTGTTGAGAGGTTGGGAGGGGCACCAATCTCTCGAAACAGACAAAGTGGTAGAAGTTCCCTGGGCATTGACGAATCGAGGGGTTTTCACTCTATGGATCAAGACAGTGAACTCTGGACTTCGCAAATGAGAAGGTCCCAGTCTCAGTTCTCGCAAGAACCGAACATAAAGCCCCCTGGACTCAGTCAGGAAGCACTCGACTGTTTGCATATGGAAGTTTTCAGCAGCAGGGAAACAGGATTGGAAGGATTGCAATCTGGAATAGTGCATGATTGTGGCATATGTTTGGAAGTTTTCGTGGATGGAGATGAATTGATATGCTTGCCATGTGGACACAGATTTCACTCTGGTTGCTTGGTTCCTTGGGTTCGCAGATGCGGGGACTGTCCGTTCTGTCGAAGCAGTATAGTTGTTAAGTATAGTTGTAGTCAATGTAATTA 806 0.4814 MTSASELFYTRRHRLGRSTNDIGFDSSSARDLIFNNRRHHLHHRRHDLDDGEALRRATHMRQPCRRGSQSHAEHAIGRLDIGSSWSLSRNSINVAENVSGVSSPRATGTERLPTAVMLARARLVERLGGAPISRNRQSGRSSLGIDESRGFHSMDQDSELWTSQMRRSQSQFSQEPNIKPPGLSQEALDCLHMEVFSSRETGLEGLQSGIVHDCGICLEVFVDGDELICLPCGHRFHSGCLVPWVRRCGDCPFCRSSIVVKYSCSQCN 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00365 268 PANTHER SI:CH211-59O9.10 1 260 - -
Bva13g00365 268 Pfam Ring finger domain 213 255 IPR001841 -
Bva13g00365 268 SUPERFAMILY RING/U-box 213 261 - -
Bva13g00365 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 260 IPR013083 -
Bva13g00365 268 MobiDBLite consensus disorder prediction 130 178 - -
Bva13g00365 268 MobiDBLite consensus disorder prediction 155 178 - -
Bva13g00365 268 CDD RING-H2_PA-TM-RING 213 255 - -
Bva13g00365 268 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 260 - -
Bva13g00365 268 SMART ring_2 214 254 IPR001841 -
Bva13g00365 268 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00365 Bva-Chr13 1705060 1708396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00365 1 259 C3H Transcription Factor Family AT1G49850 41.985 4.18e-40 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00365 13 1705060 1708396 Bva13g00365 13 1705060 1708396 ECH