Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00357 ATGCTGTGGCATGATGTTTCCTCTATACAAATGAGTAGTCAAACTGGAAATTTGACATGCCATAATTACATTACATCAGAACAGATGCATGAGTTTGATCCTGGAACTGCACATGTTGAATTGTGTGATAAAACACAGAAGATTGGTTTTCAATGTTCAAGTGATGAACAAAAGGTCATTGGAACTTTGGTTGCTAGCTCTGTTgttgatgaaaaattaaatcaaatttctgaTAGAATAAGTGGGAACTCAGTCATTCAGCTGCTTGGAACTTCTCAATGTGAATTAGGAAAAAGTCGTCAGACTGAGGAAGGTTCTCGCCTTCAACAGTGCACTGTAGGATCAGTTTCTGGTAATTTATCTAATGATAAATCTGCAAAGATAATTCAGCCACCAGCCCAAGTTGTTCAAAATGAATCTGTAGAAAATGTACCCGGGAAAGGTTCATGTCTTCAACAATGCAACATAGAACCGGTTTATGGTAATTTATCTAATGATAAATCAGAAAAGATATGTCAGCCACACTCTCAAGATGTTGAAAATGAACTTgtagaaaaaagagatacagCAACTAGCTTTCATGTTAATGACCTGATGCAATCAGTTCCTGCGCAAGTGAATTCTAGCAATGAGCAATTGGTTCCACCTTCTGGAGATGTTGTCAACAATACTAGTTCTGAATGTGTCGACATAAAGTCTAAAAGGGAAACTAGTATCCGATTGGGCCGCAAGGCTAAAAAGACACCAAAAcgattgaagaagaaatatatgcTAAGATCATTAGGAGGCAGTGACAGAGCTTTGCGGTCAAGGGCACGAGAAAAGCCTAAAGCACCTCAACCGAATAGTAATTTGGTTAATGTTGATAACGATGGAGCGAACAAGAGGGGTGGGAGGAAGAGGAGAggtagaaagaagaaaaagagaaggggGGAGGAGATGTCTGATGAATTTTCAAGAATTAGAGCACACTTGAGATATCTTCTGAACCGAGTGAGCTATGAGCAAAGCTTGATTGATGCTTACTCTGGTGAGGGATGGAAAGGACACAGcttggaaaaattaaaacctgAAAAGGAGCTTCAACGTGCCAAGTCTGAAATACTTCGGCgtaaattgaaaattaggGAACTGTTTCGACATCTGGATACATTGTCTGCTGAAGGAAGGCTTTCAGAATGTTTGTTTGATCCTGAAGGAGAGATTTGCAGTGAGGATATATTCTGTGCAAAGTGCGGGTCCAAAGATTCGACTATTGACAATGATATAATACTCTGTGATGGCGCCTGTGACCGTGGGTTTCACCAGTTCTGTTTGGAACCTCCATTACTAACTGAAAACATTCCACCTGGTGAAGAGGGTTGGCTTTGTCCTGGTTGTGATTGTAAAGATGATTGCGTCGATCTTCTCAATGACTCCTTAGGAACAAGTCTCTCTCTAAGTGATACCTGGGAGAGGGTTTTCCCTGAAGCAGCTGCAACCACTGGAAATAATTTGGATCACAACTTAGGACTTCCTTCAGATGAttctgatgatgatgattataATCCCGATGTTGCAGAAGATGAGGAGATTAGAGGTGGTGAACTGAAATCTGATGAATCTGATTATTCTTCTGCTTCTGAGGAATTGAAGGCTTCACCCTCTGATGAAATGAAGGCTAGACATAATAAAGATCAATATTTAGGCCTTCCTTCTGATGATTCAGAGGATGATGATTTTGATCCAAATGCTTCAGatcttgaaagaaaagatatggAGGAAAGTTCAAGTTCTGATTTCACGTCTGACTGTGAGGATCTTACCACTGCAATTGATGTTAGTCAGGATCAGAATCCCATGTTTGCTTCCCTGAATGATATTAGACTGTCCAAAGGTTCTGGTAGACTAAAATGTAAAGTTGGTAAGAAGCAATCCCTTGCTGATGAGCTGTCATCTTTAACAGAGCCAGATCCTGGCCTAGAGGACTCTAATCCTGTTTatgggaaaagaaatatagaaagGCTGGACTACAAAAAGCTGTATGACGAGACATTCCAAAATGTGCAGTCTAATAGTagtgatgatgaagattgGACTGAGACCACTACTCCGAGTAGAAGAAAGACATTCACTAACAACGTGGATCCAGTGTCACCAGATGgaaaccagaaaaagaaagaaactgcaCATACTCATAGGAGAAATACTCGTCAGAGAAAAGTTGAAAGTACAGGTAATTCACCCATCAAATCATCTGAAGGCTCTCGACCTTCAACTTACAGAAGGCTGAGTGAAGCTGTAGTTCAGAGACTTGATAAATCCTTTAAACAAAATCAGTATCCAGCTCGAGCTGCAAAAGAAAGCTTGGCACAAGAACTAGGAATCACGCTCCAACAGGTTAACAAATGGTTTGAGAATGCCCGCTGGAAATTTCGACATTCATCACATTTGGAAGCTAGCACAGGCGGAGATCCCTTACAGCAGGCTACTTGCAGCAGAGTTGAAAATGGGGAATTGCTCGTGGGTGAGGAGGAAAGGAAATCTGAATTGATGTTGCAGGAAAGCAGTAGAGAAAATCCAAAAACCCCAAGCACTAGAAAGAGGAAGCATAAGTCGGATCCTCAGGCATCTGACACAAATGTGGGAAATGATAGTGCAGCAACAAAGCCTCCCGCTGGCTCACCAATAGCTTATAAAGTGCAAACAGGTCAGAAAACGAagacaaggaagaaaagatG 2720 0.3798 MLWHDVSSIQMSSQTGNLTCHNYITSEQMHEFDPGTAHVELCDKTQKIGFQCSSDEQKVIGTLVASSVVDEKLNQISDRISGNSVIQLLGTSQCELGKSRQTEEGSRLQQCTVGSVSGNLSNDKSAKIIQPPAQVVQNESVENVPGKGSCLQQCNIEPVYGNLSNDKSEKICQPHSQDVENELVEKRDTATSFHVNDLMQSVPAQVNSSNEQLVPPSGDVVNNTSSECVDIKSKRETSIRLGRKAKKTPKRLKKKYMLRSLGGSDRALRSRAREKPKAPQPNSNLVNVDNDGANKRGGRKRRGRKKKKRRGEEMSDEFSRIRAHLRYLLNRVSYEQSLIDAYSGEGWKGHSLEKLKPEKELQRAKSEILRRKLKIRELFRHLDTLSAEGRLSECLFDPEGEICSEDIFCAKCGSKDSTIDNDIILCDGACDRGFHQFCLEPPLLTENIPPGEEGWLCPGCDCKDDCVDLLNDSLGTSLSLSDTWERVFPEAAATTGNNLDHNLGLPSDDSDDDDYNPDVAEDEEIRGGELKSDESDYSSASEELKASPSDEMKARHNKDQYLGLPSDDSEDDDFDPNASDLERKDMEESSSSDFTSDCEDLTTAIDVSQDQNPMFASLNDIRLSKGSGRLKCKVGKKQSLADELSSLTEPDPGLEDSNPVYGKRNIERLDYKKLYDETFQNVQSNSSDDEDWTETTTPSRRKTFTNNVDPVSPDGNQKKKETAHTHRRNTRQRKVESTGNSPIKSSEGSRPSTYRRLSEAVVQRLDKSFKQNQYPARAAKESLAQELGITLQQVNKWFENARWKFRHSSHLEASTGGDPLQQATCSRVENGELLVGEEERKSELMLQESSRENPKTPSTRKRKHKSDPQASDTNVGNDSAATKPPAGSPIAYKVQTGQKTKTRKKR 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00357 906 MobiDBLite consensus disorder prediction 735 753 - -
Bva13g00357 906 MobiDBLite consensus disorder prediction 595 611 - -
Bva13g00357 906 Pfam PHD-finger 408 463 IPR019787 -
Bva13g00357 906 MobiDBLite consensus disorder prediction 832 848 - -
Bva13g00357 906 PANTHER HOMEOBOX PROTEIN HAT3.1 205 861 - -
Bva13g00357 906 SUPERFAMILY FYVE/PHD zinc finger 399 466 IPR011011 -
Bva13g00357 906 MobiDBLite consensus disorder prediction 577 591 - -
Bva13g00357 906 ProSitePatterns Zinc finger PHD-type signature. 409 460 IPR019786 -
Bva13g00357 906 SMART PHD_3 408 461 IPR001965 -
Bva13g00357 906 CDD PHD_PRHA_like 408 460 IPR045876 -
Bva13g00357 906 Pfam Homeodomain 754 807 IPR001356 GO:0003677
Bva13g00357 906 CDD homeodomain 755 809 IPR001356 GO:0003677
Bva13g00357 906 SUPERFAMILY Homeodomain-like 750 810 IPR009057 -
Bva13g00357 906 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 205 861 - -
Bva13g00357 906 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 465 IPR013083 -
Bva13g00357 906 ProSiteProfiles Zinc finger PHD-type profile. 406 463 IPR019787 -
Bva13g00357 906 MobiDBLite consensus disorder prediction 831 906 - -
Bva13g00357 906 SMART HOX_1 750 812 IPR001356 GO:0003677
Bva13g00357 906 MobiDBLite consensus disorder prediction 680 713 - -
Bva13g00357 906 MobiDBLite consensus disorder prediction 632 665 - -
Bva13g00357 906 MobiDBLite consensus disorder prediction 495 611 - -
Bva13g00357 906 MobiDBLite consensus disorder prediction 258 315 - -
Bva13g00357 906 ProSitePatterns 'Homeobox' domain signature. 783 806 IPR017970 GO:0000981|GO:0006355
Bva13g00357 906 MobiDBLite consensus disorder prediction 521 565 - -
Bva13g00357 906 ProSiteProfiles 'Homeobox' domain profile. 748 808 IPR001356 GO:0003677
Bva13g00357 906 MobiDBLite consensus disorder prediction 680 756 - -
Bva13g00357 906 Gene3D - 744 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00357 Bva-Chr13 1664386 1670290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00357 266 865 Homeobox Transcription Factor Family AT3G19510 44.094 2.37e-125 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Bva13g00357 PHD 4.5e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00357 - - aprc:113871869 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00357 13 1664386 1670290 Bva13g00357 13 1664386 1670290 ECH