Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00325 ATGGACAAGCCTGATAATACTTCAAATTCGCCACCAATTAAATATCCATCTACTTCACCACCTGCCAAAGATCCTGAAGGGCAGGCTTCTGTTGCTGTAGTTTCTGGACCAGATAATTCTGCAAATGAGGCATCCTCTAGACCATCTTCCACTGGCATATCATCTTGGGCAAAAAGTTTGAGAATTCCCCAGCCATTTTCTGGCTCTCATGATGACTCAACAAGTGACAATGCTGGGAAATCTCCTTTTTCACGATTTACCAGTGGTTTAGGATTGCGAATGTCTCCAAAATCTCCCCCATCTGAAGATAGTTCCAGTGAAACAACTCCCCAATCTAATATAATTGGAAGCATCACAAAAGGCCTGGTTGACACTTCTCGTAATGCAGTGAAAGCTGTGCAAGTTAAGGCTAGGCATGTTGTTTCTCAGAATAAACGCAGATACCAGGAAGGGGGATTTGATCTAGATATGACATATATCACTGAGAATATTATTGCTATGGGGTTCCCGGCTGGTGATATGAGTTCTGGATTTTTTGGTTATGTGGAGGGTTTTTACAGAAATCATATGGAAGAAGTGATTAAGTTTTTTGAGACTCATCATAAGGATAAATACAAAGTGTATAATCTTTGCTCTGAGCGGCTGTATGATGCATCATTACTCGAGGGGAAGGTCGCGTCCTTCCCCTTTGATGACCACAATTGCCCGCCGGTTCAATTGATTATATCATTTTGTCATAGTGCATACTCATGGTTGAAAGAAGACATTGAGAATATTGTGGTTGTCCACTGTAAGGCTGGAATGGCAAGGACAGGATTGATGATTTCTAGTCTTCTATTATTCTTAAAGTTCTTCCCAACTGCTGAGGAATCCATTGATTACTACAATCAGAAAAGATGTTTTGATGGTAAAGGCCTTATTCTGCCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGTGTTTTGACTTACTTCAATGGAGAAAACCCACCAGCTCGCAGGTGCATGCTCAGGGGATTCCGGCTTCACAGGTGCCCCTACTGGATCAGGCCCTCTATAACTGTCTCGAATCATAATGATGTTTTGTTCTCAACCAAAAAGCATTCACGGACAAAGGATCTTTCGCCAGAAGATTTTTGGTTTTCTGCACCAAAAAAGGGAGTCATGGTCTTTGCGTTGCCAGGAGAGACTGGACTTACAGAGTTGGCCGGGGACTTCAAAATCCATTTTCATGATCGCCAAGGAGATTTTTACTGTTGGTTGAACACAACTATaacagaaaataagaaagtattGAACACTAGTGATCTTGATGGTTTTGACAAGAGAAAATTGCCTTCCCCGGGATTTATGGTTGAGGTTGTGCTAGTGGATTATAATGGCAGTGTTACAACATCGAAACCTGAAACTGTTACCAAGAAAACAGGTGAGAGATCAAGTAGTAGTCCTGCCCCTGTTGATGTGGGCGTCACCACTCCAAATGCAGACAAGGAATCACGGAGTGATGATAAAGATGATGTGTTTTCAGATGGTGAGGGAGAGGATGCTGGTTCTTCAAGAAGCAGGCAAACAAAAGCAGCTTCTGAAGCAGCCGGGACTGCTTCTAGTGCTGCGATTGGATCTGAATCCGACATAagttcaaatcaaatcaaaagttTGACACATGCAACTGAACAAGTCTCCTTGGGAAATACAGGCTCTATCCCCGTTCGTAGTGTCAGTGAGCCAAAAAGTGATGttgatgaaaaaagaaaagggtccAGCCTGGAGGCTCCCAGCTCAGAAAGTGAATTTAAGGCAATGGCTGCCGATGCTTCTGTTTTTACGTTTGGAGATGAAGAAGACTATGAAAGTGAGTG 1859 0.4147 MDKPDNTSNSPPIKYPSTSPPAKDPEGQASVAVVSGPDNSANEASSRPSSTGISSWAKSLRIPQPFSGSHDDSTSDNAGKSPFSRFTSGLGLRMSPKSPPSEDSSSETTPQSNIIGSITKGLVDTSRNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLLEGKVASFPFDDHNCPPVQLIISFCHSAYSWLKEDIENIVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIDYYNQKRCFDGKGLILPSQIRYVKYFERVLTYFNGENPPARRCMLRGFRLHRCPYWIRPSITVSNHNDVLFSTKKHSRTKDLSPEDFWFSAPKKGVMVFALPGETGLTELAGDFKIHFHDRQGDFYCWLNTTITENKKVLNTSDLDGFDKRKLPSPGFMVEVVLVDYNGSVTTSKPETVTKKTGERSSSSPAPVDVGVTTPNADKESRSDDKDDVFSDGEGEDAGSSRSRQTKAASEAAGTASSAAIGSESDISSNQIKSLTHATEQVSLGNTGSIPVRSVSEPKSDVDEKRKGSSLEAPSSESEFKAMAADASVFTFGDEEDYESE 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00325 619 ProSitePatterns Tyrosine specific protein phosphatases active site. 262 272 IPR016130 GO:0016311|GO:0016791
Bva13g00325 619 MobiDBLite consensus disorder prediction 465 488 - -
Bva13g00325 619 MobiDBLite consensus disorder prediction 33 84 - -
Bva13g00325 619 MobiDBLite consensus disorder prediction 520 572 - -
Bva13g00325 619 ProSiteProfiles Phosphatase tensin-type domain profile. 146 325 IPR029023 -
Bva13g00325 619 MobiDBLite consensus disorder prediction 98 118 - -
Bva13g00325 619 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 17 619 - -
Bva13g00325 619 MobiDBLite consensus disorder prediction 496 519 - -
Bva13g00325 619 MobiDBLite consensus disorder prediction 575 590 - -
Bva13g00325 619 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 17 619 - -
Bva13g00325 619 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 260 299 IPR000387 GO:0016311|GO:0016791
Bva13g00325 619 CDD PTP_PTEN 156 320 IPR045101 GO:0016791
Bva13g00325 619 SMART PTEN_C2_2 330 458 IPR014020 -
Bva13g00325 619 MobiDBLite consensus disorder prediction 465 600 - -
Bva13g00325 619 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 159 327 IPR029021 -
Bva13g00325 619 Gene3D Protein tyrosine phosphatase superfamily 131 328 IPR029021 -
Bva13g00325 619 MobiDBLite consensus disorder prediction 1 118 - -
Bva13g00325 619 ProSiteProfiles C2 tensin-type domain profile. 332 459 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00325 Bva-Chr13 1521373 1526960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00325 32 619 Protein tyrosine phosphatase (PTP) family AT3G19420 69.076 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00325 K01110 - gmx:100784003 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00577 08 2978724 2982437 Bva13g00325 13 1521373 1526960 BWGD
Bva13g00325 13 1521373 1526960 Bva13g00325 13 1521373 1526960 ECH
Bva13g00325 13 1521373 1526960 Bva14g00403 14 1983022 1988478 ECH