Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00313 ATGGAGATCGCTGATGAGGTGCCTCTTCTTCGCGATGATAACTCAAACCCCGCTGTCTCCACCGATAGCGTCTTGAACtcgtcttcttcttcatcctccTCGTCGTCGTCGTCGCCTCGTGGTtcgaaggaaaaggaaaacgaAGCCAACGTGTCTACGTCGGCCAGGTATGACGATGAAgatgaggaggaggaggaCGTCTGTCGGATATGTCGAAACCCTAGTGATGCTGAGAATCCTCTCAGGTATCCTTGCGCATGTAGTGGGAGCATCAAGTTTGTGCATCAGGATTGTCTGCTTCAATGGCTTAATCACAGCAATGCTCGTCAATGCGAGGTCTGCAAAcatgcattttccttttctcctgTTTATGCTGAGAATGCACCAGCTAGGCTACCTTTCCAGGAGTTTGTGGTTGGAATGGCAATGAAGGCTTGCCATGTTCTGCAGTTCTTTTTGCGCCTGAGTTTTGTACTCTCTGTCTGGCTCCTTATTATTCCTTTCATCACATTTTGGATATGGCGACTGGCTTTTGTGAGGAGCTTTGGTGAAGCCCAGAGGCTATTTCTAAGTCATTTATCTACTGCAGTTATTCTGACTGATTGCCTGCATGGGTTCCTACTTTCTGCAAGCATTGTCTTCATTTTCCTCGGAGCCACTTCTTTGAGAGATTACTTTAGGCATTTACGAGAAATTGGAGGACAGGAAGCTGATCGAGAAGATGAAATGGACAGAAATGGTGCTCGAATTGCTAGAAGACCTCCTGGACAGGCTAACCGGAATATTGCTGGTGATGGAAATGGTGAAGATGCTGGTGGGGCACAGGGAATTGCAGGAGCTGGTCAAGTAATCAGAAGGAATGCTGAAAATGTTGCTGCTCGGTGGGAGATGCAAGCAGCACGTCTTGAGGCTCATGTTGAGCAAATGTTTGATGGTTTGGATGATGCTGATGGTGCAGAGGATGTACCGTTTGATGAGCTTGTTGGCATGCAGGGTCCTGTTTTTCATTTGGTTGAAAATGCATTTACTGTTCTGGCTAGCAATATGATTTTCCTCGGTGTTGTAATCTTTGTTCCCTTTTCACTGGGTCGTGTCATACTCCATTATCTATCTTGGTTCTTTTCAACTGCTAGTGGTCCTGTATTGTCTACTGTCATCCCATTCACAGACACAACTCTCTCGCTAGCAAATATTACCTTAAAAAATGCTTTAACTGCTGTTAGAAATTTGTCATCTGATGCCCAAGAAAGCAGCATGATTGGCGAGGTTGCAGAAATGCTGAAAGTGAATGGAAGCGGACTGGGTGAAGTTTCAAGTAATGTTAGTGCAACTGTATCAGTTGAAGTCTTGAAAAGAGGGTCAATTGTAACTTCAAGGCTTTCTGATGTTACCACACTTGCCATTGGATATATGTTCATATTCACTCTAGTTTTCTGCTACTTTGGCATTGTGGCTTTGATTCGTTACACAAGGGGTGAGCCTTTGACCATGGGAAGGTTCTATGGTATTGCTTCTATAGCAGAGACAATTCCATCTCTCTTTAGGCAGTTTCTGGCAGCAATGAGGCATTTGATGACCATGGTTAAAGTTGCTTTCCTTTTGGTTATTGAACTGGGGGTGTTCCCTTTGATGTGTGGATGGTGGCTAGATGTTTGTACCATACGGATGTTTGGGAAGACAATGGCTCACAGAGTTCAGTTCTTCTCTGCTTCTCCTTTAGCAAGCTCATTGGTTCATTGGGTCGTAGGGATAGTGTACATGCTACAAATTAGCATATTTGTCAGCCTCCTTAGAGGGGTGTTGCGAAATGGAGTTTTGTATTTCCTTCGAGATCCGGCTGATCCAAACTACAATCCGTTCCGCGATTTGATTGATGATCCCGTGCACAAACATGCTCGCAGGGTTTTGTTATCTGTTGCTGTTTATGGAAGTTTAATTGTTATGCTGGTATTCTTACCTGTCAAACTTGCTATGCGAATGGCTCCTTCCATCTTTCCACTTGATATATCGGTATCTGATCCATTCACAGAAATTCCAGCTGACATGCTTCTCTTTCAGATCTGCATTCCATTTGCAATTGAGCATTTTAAATTGAGGACAACTATTAAATCCCTACTGCGCTATTGGTTTACAGCAGTTGGCTGGGCACTTGGTTTGACTGATTTCTTACTCCCCCGATCTGATGACAACAGTGGTCAGGAAAATGGTAATGCAGAGCCAGGCAGGCAGGATCGGCTACAAGTAGTACAAGCAGCTGTACATGATCAGGCTATGGCAGCATTTCCAGGTGATGAAGTGAACAGAGGCATGCTTGCTTCAGGAGACCTGAATGCCAGAGAGGATTATGATAATGATGAACAATCTGATTCTGATTATGGTTTTGTACTTCGCATTGTTCTGTTGCTGGTGGTTGCTTGGATGACTCTCCTCATCTTCAATTCTGCCCTAATAGTTGTACCAATTTCATTTGGCCGGGCGCTTTTCAATTCCCTTCCTCTTCTGCCCATAACTCATGGCATTAAGTGCAATGATTTATATGCTTTCTTCATTGGAAGTTATGTGATCTGGACGGCTGTTGCTGGAGCTAGATACTCAATTGAGCAAATTAGAAAGAGGAGGGCTTCAGTTTTATTGAGCCAAATATGGAAGTGGTGTAGCATTGTCGTTAAGAGTTCTGCACTTCTGTCTATATGGGTATTTGTTATCCCTGTGCTAATTGGGCTGCTCTTTGAGCTTTTGGTTATTGTGCCAATGAGAGTTCCAGTGGATGAAAGTCCAGTCTTCCTACTTTATCAAGACTGGGCACTAGgtcttatttttctcaagaTATGGACTAGATTGGTTATGCTGGATCACATGATGCCACTTGTAGACGACAGTTGGCGAGTAAAATTTGAGAGGGTGAGAGAGGATGGTTTCTCCAGGCTGCAAGGTCTTTGGGTCCTAAGGGAGATTGTGCTTCCAATCATAATGAAATTGTTAACAGCATTGTGTGTGCCTTACGTTTTAGCCAAAGGAGTGTTTCCAGTGCTTGGGTACCCGTTGGTGGTCAATTCTGCCGTCTATCGATTTGCCTGGTTGGGATGCCTCTGTTTAAGCTTTTTGTGCTTTTGTGCTAAGAGATTCCATGTCTGGTTCACAAACCTTCATAATTCAATACGTGATGACCGGTATCTGATTGGCCGGAGGTTGCATAACTTTGGGGAGGATGTTCAGGAGAAGACAAATGAAGCAGGAAATTCCAGTGCGTTGcagaataatgataataatctCCCAGGGAGTGGTTTGATTCAACATGACCACGAAGCTGATATTGGTCTACGGCTGAGGCATGTCAATCGACAATG 3347 0.4281 MEIADEVPLLRDDNSNPAVSTDSVLNSSSSSSSSSSSSPRGSKEKENEANVSTSARYDDEDEEEEDVCRICRNPSDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQEADREDEMDRNGARIARRPPGQANRNIAGDGNGEDAGGAQGIAGAGQVIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRVILHYLSWFFSTASGPVLSTVIPFTDTTLSLANITLKNALTAVRNLSSDAQESSMIGEVAEMLKVNGSGLGEVSSNVSATVSVEVLKRGSIVTSRLSDVTTLAIGYMFIFTLVFCYFGIVALIRYTRGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKTMAHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRSDDNSGQENGNAEPGRQDRLQVVQAAVHDQAMAAFPGDEVNRGMLASGDLNAREDYDNDEQSDSDYGFVLRIVLLLVVAWMTLLIFNSALIVVPISFGRALFNSLPLLPITHGIKCNDLYAFFIGSYVIWTAVAGARYSIEQIRKRRASVLLSQIWKWCSIVVKSSALLSIWVFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDDSWRVKFERVREDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLAKGVFPVLGYPLVVNSAVYRFAWLGCLCLSFLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEDVQEKTNEAGNSSALQNNDNNLPGSGLIQHDHEADIGLRLRHVNRQ 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00313 1115 SMART ringv_2 67 115 IPR011016 GO:0008270
Bva13g00313 1115 CDD RING_CH-C4HC3_MARCH6 67 116 - -
Bva13g00313 1115 PANTHER SSM4 PROTEIN 54 1057 - -
Bva13g00313 1115 MobiDBLite consensus disorder prediction 41 56 - -
Bva13g00313 1115 PANTHER ZINC FINGER, RING-CH-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 54 1057 - -
Bva13g00313 1115 MobiDBLite consensus disorder prediction 1 60 - -
Bva13g00313 1115 Pfam RING-variant domain 68 114 IPR011016 GO:0008270
Bva13g00313 1115 ProSiteProfiles Zinc finger RING-CH-type profile. 60 121 IPR011016 GO:0008270
Bva13g00313 1115 MobiDBLite consensus disorder prediction 14 40 - -
Bva13g00313 1115 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 126 IPR013083 -
Bva13g00313 1115 Coils Coil 285 305 - -
Bva13g00313 1115 SUPERFAMILY RING/U-box 62 118 - -
Bva13g00313 1115 MobiDBLite consensus disorder prediction 237 271 - -
Bva13g00313 1115 ProSiteProfiles Zinc finger RING-type profile. 68 115 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00313 Bva-Chr13 1477749 1483564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00313 7 135 C3H Transcription Factor Family AT1G50440 30.216 1.60e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00313 K10661 - gmx:100813205 1877.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00313 13 1477749 1483564 Bva13g00313 13 1477749 1483564 ECH