Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00307 ATGCCTGGGAGTTTAGAACCGTTAGATTTGGGAATTCAGATTCCTTACTACTTCAGGTGTCCGATCTCACTGGAGTTGATGCGCGACCCGGTTACCGTATGCACGGGTCAGACCTACGACCGAGCCAGCATCGAGTCGTGGGTCGCAACCGGTAACACCACCTGCCCCGTCACTCGAGCCCCTCTCGCCGACTTCACTCTTATACCCAACCACACTCTTCGCCGCCTTATTCAGGACTGGTGTGTCGCCAACCGAGCCTTCGGAATTGAGCGGATTCCGACTCCCAAACAACCCGCTGACCCGGCTTTGGTTCGCTCCTTATTGAACCAAGCTTCGTCCCAGTCGGTTCCTCAATCATCTCGTCTCTCTGCTCTGCGTCGACTCAGAGGACTCGCTCGTGACTCGGATAAAAACCGTTCCCTCATTGCTTCCCACAACGCTAGTGAAATCCTCCtccctattttattttccaacacCGAGTCATCCGAATTGAATCACGAGTCACTCGCTCTGCTCGCAATGTTTTCACTCTCCGAGTTTGAATGTGAGTCCGTCGCATCCCACCCGGATAGAATCAATTATCTATCGCGTCTCCTCTTTCATACTTCGATGGATGTTCGGGTTAACTCGGCAGTCCTTATCGAGATAGTGGTTACCGGAACTCGTTTGCCGGAGCTACGAGCTCAAATCACCAATACTGACGAAATTTATGAAGGAGTGATTGACATTTTAAAGAATCCAATTTCGTATCCTCGTTCTCTCAAGGTTGGCATAAAGGCTTTATTTTCTCTGTGCTTAGTGAAACAGACGAGGCATAAAGCCGTGTTAGCCGGAGCGCCGGGGATTCTCATCGACCGATTACCGGATTTCGAGAAATGCGACGCGGAGAGAGCATTGGCTACAATTGAATTACTATGTAGAATCCCAGCCGGATGTGCGGCATTTGCAGGACACGCGCTAACGGTTCCGCTGTTGGTTAAAATAATACTCAAGATATCGGAGCGGGCGACAGAGTACGCCGCCGGAGCACTGTTATCGCTGTGCTCTGAATCGGAGCAGAGTCAGAGGGAGGCGGTGGCGGCTGGCGTGCTGACTCAGCTGCTATTGCTGGTACAGAGTGATTGCACGGAGAGAGCGAAGAGGAAGGCGCAGCTGTTGCTGAAGCATCTTCGGGATTCGTGGCCTCAAGATTCCATCGGAAATTCTGACGATTTTGCATGTAGCGAGGTTGTTTTACCGTCGTA 1244 0.5088 MPGSLEPLDLGIQIPYYFRCPISLELMRDPVTVCTGQTYDRASIESWVATGNTTCPVTRAPLADFTLIPNHTLRRLIQDWCVANRAFGIERIPTPKQPADPALVRSLLNQASSQSVPQSSRLSALRRLRGLARDSDKNRSLIASHNASEILLPILFSNTESSELNHESLALLAMFSLSEFECESVASHPDRINYLSRLLFHTSMDVRVNSAVLIEIVVTGTRLPELRAQITNTDEIYEGVIDILKNPISYPRSLKVGIKALFSLCLVKQTRHKAVLAGAPGILIDRLPDFEKCDAERALATIELLCRIPAGCAAFAGHALTVPLLVKIILKISERATEYAAGALLSLCSESEQSQREAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKHLRDSWPQDSIGNSDDFACSEVVLPS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00307 414 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Bva13g00307 414 CDD RING-Ubox_PUB 18 59 IPR045210 -
Bva13g00307 414 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Bva13g00307 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Bva13g00307 414 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 411 - -
Bva13g00307 414 Gene3D - 90 397 IPR011989 -
Bva13g00307 414 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Bva13g00307 414 PANTHER WDSAM1 PROTEIN 4 411 IPR045185 GO:0061630
Bva13g00307 414 SUPERFAMILY RING/U-box 12 90 - -
Bva13g00307 414 SUPERFAMILY ARM repeat 103 390 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00307 Bva-Chr13 1447328 1448992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00307 1 413 U-box Gene Family AT3G19380 68.571 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00307 - - mnt:21410125 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00307 13 1447328 1448992 Bva13g00307 13 1447328 1448992 ECH