Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00304 ATGATGAGTACACCAAATGAATCAATATTCACAATATCTTCAGACTCCTTGGAACAGAAGGGGAAAAATATGACTCAGCCAAATGCAAACGTGCTTCAATCTCCTTCAAACCAACAAATCCGTAGTTCCTCCGATGGTCCAGTGGCTATCCTTTGGGATATTGAAAACTGTCCTGTTCCAAGTGATGTCCGCTCTGAAGATGTAGCTGGTAATATAAGAATGGCTTTGCGAGTTCATCCTGTAATAAAAGGAGCAGTAATGATGTTTTCTGCTTATGGGGATTTCAATGCCTTCCCCAGACGGCTAAGAGAGGGCTGTCAAAGAACTGGTGTCAAACTCATTGATGTTCCTAATGGGAGAAAGGATGCTGCCGACAAAGCCATTTTGGTTGACATGTTTTTGTTTGCCCTTGACAACCCTCCCCCTTCTTCTATCATGCTGATATCTGGAGATGTTGATTTTGCCCCAGCACTCCACATTCTTGGTCAAAGGGGATACACTGTAATTCTCGTCATCCCTTCGGGGATTGGCGTTTCATCTGCCCTCAGCAGTGCTGGCAAATTTGTCTGGGACTGGCCTAGTGTGGCTCGTGGTGAAGGTTTTGTGCCCCCGTCAAAGGCTTTAGTGCCACCTCGTATGGGTCCTTACGAGGTTGCTGGATATCTTACGGGGTGCCATATCAATGACAACCCAGATGgacaaaatgaagaagaagcaataGTTTATAGAGGGCTCTCACAGAGCTATTATAACACCAGGGATTTCTCAGTAGTATCACGATCACTATCTGAATACAACAGCGGTACCTCTAATTTATCTGGTTTTCCAACAACTTTTAGGTCACACAGCCTTCCATCTGGATTGACTGAGGTGTCAGGAGGACCTATGATTTTGAGTGACCAAAATGAATGCCCATCGTGTGTACAGCCTGGGGATTTAAAAGGTCTTAAGAGCCAGCTGGTCAAGTTACTTGAACTTTCTGGAGGATGCCTACCGCTGACCCAAGTTCCAGCTGAGTACCAAAAATTTTTCGGAAAGCCTCTTTATCTAGCTGAATATGGAGTATTCAAACTCGTGAATCTTTTCAAGAAGATGGGTGACACCATGGCTATAGAAGGGAAGGGGCATAGAAAATTTGTATATCTTCGAAACTGCAAATCAGGCCCAAGTGCCCCCCCTTTCCCTTATTCTTTGGCCCTGgcgagaaaagagaagaagggaAAGGGGGTTCATGATGAGAATGTCGATGTTATCAATGGTGGTTGCTCGTCGGATGAGTTCTCAGATGAGGAAAGAGTAGTCATAGAAGGGCATAATGAGCAAAGTAGCATAAGAAAGGGTCATCAGGGAAGAGCAGCCAGATGTGAAATTGATGACATTGAGCAGTTCAAGCACGAGCTGCAAGAGATTCTAGTCAGTTATTCTTGTCGAATACTTTTAGGTTGTTTTGAGGCAATATACCAACAGCGGTACAAGAAACCAATGGAATACCAGAGATTTGGTGTGGACAAGTTAGAGGATTTGATTGAGAAAGTCAGAGATGTGGTAGTATTGCATGAAGAACCAGGAAGCAAGAGGAAGTTCTTAGCTGCTGTTGGTGGGTA 1604 0.4327 MSTPNESIFTISSDSLEQKGKNMTQPNANVLQSPSNQQIRSSSDGPVAILWDIENCPVPSDVRSEDVAGNIRMALRVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPSGIGVSSALSSAGKFVWDWPSVARGEGFVPPSKALVPPRMGPYEVAGYLTGCHINDNPDGQNEEEAIVYRGLSQSYYNTRDFSVVSRSLSEYNSGTSNLSGFPTTFRSHSLPSGLTEVSGGPMILSDQNECPSCVQPGDLKGLKSQLVKLLELSGGCLPLTQVPAEYQKFFGKPLYLAEYGVFKLVNLFKKMGDTMAIEGKGHRKFVYLRNCKSGPSAPPFPYSLALARKEKKGKGVHDENVDVINGGCSSDEFSDEERVVIEGHNEQSSIRKGHQGRAARCEIDDIEQFKHELQEILVSYSCRILLGCFEAIYQQRYKKPMEYQRFGVDKLEDLIEKVRDVVVLHEEPGSKRKFLAAVGG 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00304 533 Pfam NYN domain 46 184 IPR021139 GO:0004540
Bva13g00304 533 Gene3D - 310 380 IPR041966 -
Bva13g00304 533 Gene3D - 456 528 IPR041966 -
Bva13g00304 533 PANTHER LIMKAIN B LKAP 37 528 IPR024768 GO:0005777|GO:0010468|GO:1903231
Bva13g00304 533 Pfam OST-HTH/LOTUS domain 459 523 IPR025605 -
Bva13g00304 533 Pfam OST-HTH/LOTUS domain 312 379 IPR025605 -
Bva13g00304 533 CDD LOTUS 312 381 - -
Bva13g00304 533 MobiDBLite consensus disorder prediction 1 41 - -
Bva13g00304 533 ProSiteProfiles OST-type HTH domain profile. 458 532 IPR025605 -
Bva13g00304 533 ProSiteProfiles OST-type HTH domain profile. 311 383 IPR025605 -
Bva13g00304 533 PANTHER - 37 528 - -
Bva13g00304 533 CDD PIN_limkain_b1_N_like 46 172 - -
Bva13g00304 533 Gene3D - 39 192 - -
Bva13g00304 533 CDD LOTUS 459 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00304 Bva-Chr13 1428638 1431429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00304 47 197 C2H2 Transcription Factor Family AT5G61190 43.046 6.43e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00304 - - gmx:100818186 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00304 13 1428638 1431429 Bva13g00304 13 1428638 1431429 ECH