Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00292 ATGTCCTCCTCCAAGAGAGCTAGAATCAGCGGAGCTCCTCCCATACCCACCGTTCCGGCGCCGCCTCAGCGCTTAACAAGCGAGCAAGAATTCTCCGTTATCGTCGCCGCACTCACCAACGTTGTTACTGGTTCCACTGCCTTATCCTCCACCTCTGAGTTTACGCAGGAATTTCGGCTCCCGCAGACATCTGACCGTGCCACCGCAGGTATCGGAACCAGCTATGATTACGGTGACCGGATGGCGTCTGCCTCCGCTAACGTAGAAACTTGCGGGGAATGCAAAATCGACGGTTGCTTGGGCTGCAACTTTTTTCCGGATGAGAAGAAGAACAATAGCGGGAACAAGCCGCAGAAGAGGAACAAGAAGAAGTACAGGGGAGTGAGACAGAGGCCATGGGGGAAATGGGCCGCGGAGATCCGAGACCCGAGACGGGCAGCCCGGGTCTGGTTGGGAACTTTCAATACTGCAGAGGAAGCGGCAAGAGCTTACGATAAAGCCGCCATCGAGTTCCGTGGGCCCCGCGCGAAGCTCAATTTTCCGTTTCTCGATAACTCGTTGACCGGTTCGCAAGCAGAGGTGCCATCAGATGAGCCAGCAGTGGTAGCAGAGCAACGAACTGATAATGTTGTGGGAAATTACGGTAGCACCTCGACGCAGACGGAAACTATGGGGAtggagaataaagaaaatgaattctGGGAAAGGCTTGGAGAAGCTGATTTTCAGCagctgatgatgatgatgaactCCAATGGGGATTCCTCGGATTCTGCTACAGGGAACACTCTTAGCTCgtg 800 0.5162 MSSSKRARISGAPPIPTVPAPPQRLTSEQEFSVIVAALTNVVTGSTALSSTSEFTQEFRLPQTSDRATAGIGTSYDYGDRMASASANVETCGECKIDGCLGCNFFPDEKKNNSGNKPQKRNKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEEAARAYDKAAIEFRGPRAKLNFPFLDNSLTGSQAEVPSDEPAVVAEQRTDNVVGNYGSTSTQTETMGMENKENEFWERLGEADFQQLMMMMNSNGDSSDSATGNTLSS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00292 266 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
Bva13g00292 266 Pfam AP2 domain 124 173 IPR001471 GO:0003700|GO:0006355
Bva13g00292 266 MobiDBLite consensus disorder prediction 1 25 - -
Bva13g00292 266 Gene3D AP2/ERF domain 123 182 IPR036955 GO:0003700|GO:0006355
Bva13g00292 266 CDD AP2 123 181 IPR001471 GO:0003700|GO:0006355
Bva13g00292 266 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 261 - -
Bva13g00292 266 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Bva13g00292 266 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Bva13g00292 266 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Bva13g00292 266 SUPERFAMILY DNA-binding domain 124 182 IPR016177 GO:0003677
Bva13g00292 266 MobiDBLite consensus disorder prediction 107 128 - -
Bva13g00292 266 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 21 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00292 Bva-Chr13 1368819 1369832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00292 19 184 AP2-EREBP Transcription Factor Family AT4G34410 46.500 4.51e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva13g00292 AP2 7.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00292 - - adu:107469741 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00292 13 1368819 1369832 Bva13g00292 13 1368819 1369832 ECH
Bva13g00292 13 1368819 1369832 Bva14g00373 14 1846283 1847245 ECH