Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00286 ATGCTTTCGTCCATGGCTGTTCAAAAACCCAAGGAGAGGTTCTCCATCTCCCCTCTACAGGTGAATAGGGGTAGGCCACTAAAGAAGGTAACGGAAAAGCTCTTCAGAAAAAAGACACAGTATTTCAAACGAGCTGATTCGGACAGACAAtCGGACACAATGACTCCAACTTTTGGGCTTCTATGCATAGACAGACGAAAGAGAGCTGCAGCTGGTAGTGTATGTGATACTTCGGAAGCTCAGTCTTCTGTTTTAGAACGAGGGAAAGAAGTTCAAGCAAATCTAGCTCCTGAATTTCCCAGCTTTATCAAGTGCATGCTCCCATCACACGTAACTGGAGGATTTTGGCTGGGACTTCCGAGCAACTTTTGTCAGCTGCATTTGCCGAAGACTGATACAATTATTGTTTTGGAAGATGAAAGTGGGAAagaatatgaaacaaaatatctttGTGGCAAGGTGGGGCTAAGTGGTGGATGGAGAGGATTTTCCTTGGCTCACAATTTGGTTAAGGGGGATGTCCTAGTTTTCCATTTAGTCCAACGTTCCAAGTTTAAGGTCTACATAATAAGATCTAATGGGTCAGATGAATTGGGTGGTGCTCTTGGCCTTCTTAAATTGGATGcttgcaagaaagaaaaggaattctATGTTCCTCAAGAAAATGATCCAAAAGGTAACCAGATGATCTGTGGCGCTAGAGTATCTCAATCAGATCAGCCTGAAAATACTAGTGAAGACTTTGGCTCTGAAGTTTTTGATGGGATTAAATTATCAGAATCTGCCATCAGTTTTCAAGAAGTGACGAGCATTGAGAATTTCAGCATTCATGTGGATGGTTTGGTTATTGACTCAGAGCTTAACAAATACCTCAAGACCAAGTATTATGAACTATGTAGCAGTCAGAGATCATTTCTTCATGATCATCTTCTTGAGGGTCTTAACTGTAAACTTGCTGCTGGTATAATTTCTGAAACAATCAATATTGCTGATGCCATTAGAGCCAGCAAGATTACAACCTCTCCTGATAGTTTTGCCATATGGGACCAAACTTTGAAAGCCTTTGAGACGATGGGTATGAATGTCAGCTTCCTGCGTGCTCGGCTAAACCAGCTCTTAAGTCTTGCTCTGAAATCAAAGAGGTATAAAGAGATTAGGCTTGAACGAGATCATGcagaagaggagaagaaaactCTTGAAGCAAAGCTTGTGGAAGTGAAAATGACAATAGATAGAATTGATGCTGAGATTGAGACCCAAAATATGAAGTCTGAGAAGCTGGAGGTCATGTTTCAAAAACTGGTTAATGCTCCTTGGCGAATAGAAACTTGTACACAAGCAGCATA 1346 0.3967 MLSSMAVQKPKERFSISPLQVNRGRPLKKVTEKLFRKKTQYFKRADSDRQSDTMTPTFGLLCIDRRKRAAAGSVCDTSEAQSSVLERGKEVQANLAPEFPSFIKCMLPSHVTGGFWLGLPSNFCQLHLPKTDTIIVLEDESGKEYETKYLCGKVGLSGGWRGFSLAHNLVKGDVLVFHLVQRSKFKVYIIRSNGSDELGGALGLLKLDACKKEKEFYVPQENDPKGNQMICGARVSQSDQPENTSEDFGSEVFDGIKLSESAISFQEVTSIENFSIHVDGLVIDSELNKYLKTKYYELCSSQRSFLHDHLLEGLNCKLAAGIISETINIADAIRASKITTSPDSFAIWDQTLKAFETMGMNVSFLRARLNQLLSLALKSKRYKEIRLERDHAEEEKKTLEAKLVEVKMTIDRIDAEIETQNMKSEKLEVMFQKLVNAPWRIETCTQAA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00286 448 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100 50 371 - -
Bva13g00286 448 Coils Coil 375 416 - -
Bva13g00286 448 Pfam B3 DNA binding domain 102 192 IPR003340 GO:0003677
Bva13g00286 448 SMART B3_2 102 193 IPR003340 GO:0003677
Bva13g00286 448 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 50 371 IPR044837 -
Bva13g00286 448 Gene3D - 77 194 IPR015300 -
Bva13g00286 448 ProSiteProfiles B3 DNA-binding domain profile. 102 193 IPR003340 GO:0003677
Bva13g00286 448 CDD B3_DNA 100 191 IPR003340 GO:0003677
Bva13g00286 448 SUPERFAMILY DNA-binding pseudobarrel domain 97 194 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00286 Bva-Chr13 1346964 1349799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00286 74 193 B3 DNA Binding Superfamily AT3G19184 54.167 1.10e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva13g00286 B3 9.6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00286 - - ccaj:109816480 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00286 13 1346964 1349799 Bva13g00286 13 1346964 1349799 ECH
Bva13g00286 13 1346964 1349799 Bva14g00360 14 1789225 1791077 ECH
Bva06g02074 06 13793378 13794857 Bva13g00286 13 1346964 1349799 ECH