Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00282 ATGGCTCAGCCTACAACCAACGGTACTGCCGATCTGAATCAGCATCAGTATCAGCAACAATTGACGCAGCCGCAGCAATATCAGCAGCAATGGATGGCCATGCAGTATCCGGCTGCAGCCATGGCTATGATGCAGCAGCAAATGATGATGTATTCACAGCATTACGTGCCTTATGTTCATCATTATCAGCCGCCTCACCAGCAGCTCAAGCCGCCGCATCAGCAGCAGAAGCAGGGTTCCACCGATGAGATCAGGACGATCTGGCTCGGTGACCTTCATCATTGGATGGATGAGAATTATCTCCATAGTTGTTTTGCTCACACAGGCGAGGTTGTATCGGCCAAGGTTATCAGAAATAAGCAAACTGCTCAGTCGGAGGGATATGGATTTGTTGAGTTTTATTCCCGTGCAACAGCGGAAAAAGTTTTGCAGAGCTTTAATGGTACAATGATGCCAAATACTGATCAGCCATTTCGTTTGAATTGGGCTACATTCAGTGCTGGTGATAGGAGATCTGATTCTAGTTCTGATCTCTCTATATTTGTGGGCGACCTGGCCATAGATGTTACTGATGCTATGCTTCAGGAAACCTTTGCTAGCAGATATTCGTCTGTTAAGGGGGCAAAAGTTGTTATTGATTCAAACACAGGCCGTTCAAAAGGTTATGGTTTTGTTAGATTTGGAGATGAAAATGAGAGGACGAAGGCAATGACTGAAATGAATGGCATTTATTGTTCAAGTAGGCCGATGAGAATAGGTGTTGCAACGCCCAAGAAGTCGCATGGATATCAACAACAATATTCCTCACAAGCTGTTGTCTTGGCTGGTGGACATTCATCTAATGGTACTATCGCCCAAGGTTCCCAGTCTGAAGGGGACTTTAGTAACACAACTATATTTGTTGGGGGGCTTGATTCTGAGATCAGTGATGAAGATCTCAGACAATCATTTTTGCAATACGGTGAAGTTGTTTCTGTAAAAATACCGGTGGGTAAAGGATGTGGTTTTGTTCAATTTGCTGACAGAAAAAATGCTGAGGAAGCAATTCAGGGATTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGTCTTTCATGGGGTCGCAGTCCTGGAAATAAGCATTGGAGGACGGATTCCAATAACCAGTGGAATGGAAACCACTATGGAGCACAGGGATATGGAGGCTATGGGTATGCTGTGAGGCAGAATCGTGATGTAAGTATGCATGCTGCGGCTACAGTCCAAGGGGCTTCCTA 1256 0.453 MAQPTTNGTADLNQHQYQQQLTQPQQYQQQWMAMQYPAAAMAMMQQQMMMYSQHYVPYVHHYQPPHQQLKPPHQQQKQGSTDEIRTIWLGDLHHWMDENYLHSCFAHTGEVVSAKVIRNKQTAQSEGYGFVEFYSRATAEKVLQSFNGTMMPNTDQPFRLNWATFSAGDRRSDSSSDLSIFVGDLAIDVTDAMLQETFASRYSSVKGAKVVIDSNTGRSKGYGFVRFGDENERTKAMTEMNGIYCSSRPMRIGVATPKKSHGYQQQYSSQAVVLAGGHSSNGTIAQGSQSEGDFSNTTIFVGGLDSEISDEDLRQSFLQYGEVVSVKIPVGKGCGFVQFADRKNAEEAIQGLNGTVIGKQTVRLSWGRSPGNKHWRTDSNNQWNGNHYGAQGYGGYGYAVRQNRDVSMHAAATVQGAS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00282 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 257 IPR000504 GO:0003723
Bva13g00282 418 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 18 417 - -
Bva13g00282 418 SUPERFAMILY RNA-binding domain, RBD 289 397 IPR035979 GO:0003676
Bva13g00282 418 Gene3D - 84 164 IPR012677 -
Bva13g00282 418 SUPERFAMILY RNA-binding domain, RBD 162 279 IPR035979 GO:0003676
Bva13g00282 418 Gene3D - 277 403 IPR012677 -
Bva13g00282 418 SMART rrm1_1 298 365 IPR000504 GO:0003723
Bva13g00282 418 SMART rrm1_1 86 161 IPR000504 GO:0003723
Bva13g00282 418 SMART rrm1_1 179 253 IPR000504 GO:0003723
Bva13g00282 418 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 18 417 - -
Bva13g00282 418 CDD RRM2_SECp43_like 180 256 - -
Bva13g00282 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 369 IPR000504 GO:0003723
Bva13g00282 418 Gene3D - 165 270 IPR012677 -
Bva13g00282 418 SUPERFAMILY RNA-binding domain, RBD 60 167 IPR035979 GO:0003676
Bva13g00282 418 CDD RRM1_SECp43_like 86 166 - -
Bva13g00282 418 CDD RRM3_NGR1_NAM8_like 296 367 - -
Bva13g00282 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 154 IPR000504 GO:0003723
Bva13g00282 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 362 IPR000504 GO:0003723
Bva13g00282 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 250 IPR000504 GO:0003723
Bva13g00282 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 165 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00282 Bva-Chr13 1329495 1333838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00282 87 376 Eukaryotic Initiation Factors Gene Family AT4G34110 28.475 7.86e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00282 - - gmx:100798089 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00282 13 1329495 1333838 Bva13g00282 13 1329495 1333838 ECH