Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00254 ATGCCGCGCCCTTGTTTCCACAAGCTTATTGTTCCTTCGACGGTCCAAGCTAGGCAACTGAGGATTCCAGATAATTTTCTGAGAAAAGCTGGGGGTGACCTTTCTGCAATTGTGTCCTTCATTGTTCCTGATGGAAGTGTTTGGCATGTTGGATTAAAAAAAGCAGACAACAAGTTTTGGTTCCATGATGGTTGGCAGGAATTTGTCCAACGCTACTCCATTGGTGTTGGATGCTTTTTAGTGTTCAGATACGAAGGGAATTCATCTttcaaagttaatattttcaatttggcTACTTCTGAGATAAACTATCAATCAGCCATGCGAAGTAGTAAAGAAGGTTCTTACTCTGCCAATCAACATAgtatttttgatgaaattgatgATCAAGATTCCTTCGAAATGTTGGAATCATCACCTTCCAGCCTTACTTCTGGTTCATTGCAAAACAAGGTTTTTGCCGGATCTGTAGGGCAATTGACACATTCCAAGAATTATACTCCTCCAGCATTGCAGAATTTGTTTAATGGGTCTAAACTTAATTCCATAAACTGGGGAGATGGTGGGAACGTGCTTCCTTCTAAGGGTGCTAATTCACTAGGGACTCACTCTACCCGAGATATAGGTGTTCAATTTAATGTGATGGAGTTTAAAAGGTCTACTGAAGAGTTGAACTTGCGCAGTTCTAATGATGAAGCgcaaaattctaaaaaaagaaaaaggcgaAAATCTGATCCTATTTATGGAAGTGCAGATGGTCTGGAATCTTCTTCCCAGAATGAAGAGGAAGTAGAAATGCGCTTTAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTTACagcagaagaaagagaaagggcaATAAACGCAGCAAAAGCTTTTGAGCCACCTAATCCTTTTTGTAGAGTTGTCCTGCGACCTTCCTATCTATATAGGGGATGCATAATGTACTTGCCGTCTTGCTTTGCAGAGAAGTATTTGAATGGGGTTTCCGGATTCATCAAACTTCAGATTGCTGATGGAAGACATTGGCCTGTTCGCTGCCTCTATAGAGGTGGTAGGGCAAAGTTAAGCCAAGGGTGGTTTGAATTTACGTTAGAGAACAATATAGGGGAAGGTGATGTATGCGTGTTTGAGCTGCTTAGAATGAAGGAGGTAGTGCTCAAAGTTACTGTATTCCGTGTTGTTGAGGATGCAAGATTGTTGAACCCGCCTTTGCAACAGAATGTCAGCACAGCTAAACTGATGATGAACACTCACTTGCGCCAAAATGTCAGCCCTACTAAACTGTTGAATGCACCCTTGCAGCATACTGTCAGCCCTATTAAACCAGTTAGAAACTA 1349 0.3892 MPRPCFHKLIVPSTVQARQLRIPDNFLRKAGGDLSAIVSFIVPDGSVWHVGLKKADNKFWFHDGWQEFVQRYSIGVGCFLVFRYEGNSSFKVNIFNLATSEINYQSAMRSSKEGSYSANQHSIFDEIDDQDSFEMLESSPSSLTSGSLQNKVFAGSVGQLTHSKNYTPPALQNLFNGSKLNSINWGDGGNVLPSKGANSLGTHSTRDIGVQFNVMEFKRSTEELNLRSSNDEAQNSKKRKRRKSDPNGLESSSQNEEEVEMRFRFYESASARKRTVTAEERERAINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKYLNGVSGFIKLQIADGRHWPVRCLYRGGRAKLSQGWFEFTLENNIGEGDVCVFELLRMKEVVLKVTVFRVVEDARLLNPPLQQNVSTAKLMMNTHLRQNVSPTKLLNAPLQHTVSPIKPVRN 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00254 444 CDD B3_DNA 296 391 IPR003340 GO:0003677
Bva13g00254 444 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Bva13g00254 444 Gene3D - 1 98 IPR015300 -
Bva13g00254 444 MobiDBLite consensus disorder prediction 223 247 - -
Bva13g00254 444 Pfam B3 DNA binding domain 6 95 IPR003340 GO:0003677
Bva13g00254 444 Pfam B3 DNA binding domain 301 391 IPR003340 GO:0003677
Bva13g00254 444 Gene3D - 275 395 IPR015300 -
Bva13g00254 444 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Bva13g00254 444 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 420 - -
Bva13g00254 444 MobiDBLite consensus disorder prediction 223 256 - -
Bva13g00254 444 ProSiteProfiles B3 DNA-binding domain profile. 298 393 IPR003340 GO:0003677
Bva13g00254 444 SMART B3_2 298 393 IPR003340 GO:0003677
Bva13g00254 444 SMART B3_2 6 98 IPR003340 GO:0003677
Bva13g00254 444 PANTHER B3 DOMAIN-CONTAINING 1 420 - -
Bva13g00254 444 CDD B3_DNA 4 96 IPR003340 GO:0003677
Bva13g00254 444 SUPERFAMILY DNA-binding pseudobarrel domain 291 391 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00254 Bva-Chr13 1211939 1215681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00254 1 392 B3 DNA Binding Superfamily AT3G18990 51.256 2.02e-131 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva13g00254 B3 8.6e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00254 - - gmx:100813285 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00254 13 1211939 1215681 Bva13g00254 13 1211939 1215681 ECH