Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00241 ATGATGAGGATGGTAATGGTTCCTTCTCAGCCACCGTATCGGCAGTGGGCCCCATCTCCCTCTCctatttcttctccttctccttccctTTCTGCTTTGGTCAACGAAATATCGTcgccgcccacgtcgccggtTGACTTCAGCCCGCCCTTGATTGCCATGGTGGTTGTCGTCGCCACTGCTTTCCTCGTCGTTACCTATTCCCGCCTCATCTCCCGCCACCTCGTGCCTCCAATTCTTCACCTCTTTCGGCGGTGGCGCCGCCGTCGAGGACGATCTTACCTCCCGTCCTCGTCCGGGGACCTGGACTCGCTCCCATATGACTCGCCTTTCGAGGCAATAGATGGGCCCCGCGTGTTCTCCCCTTACGGCCTGGACGAATCTGTGATCAAGACCATTCCGTTTTCCCTCTACACAACCAAATCCAATGGTCGCTTCGAAGAGTCTCGTCGTGATTGCGCTGTGTGTTTATTGGAATTCGAAGACGACGAATATGTCCGCACGCTACCAGTTTGTTCTCACACTTTTCACGTTGATTGCATAGATGTTTGGCTCAGGTCCCACGCCAACTGTCCTCTTTGCCGCGCCGGAGTATTATGTGCTGAATCTCCCTTCAGGCCAATGATGGCTGCAAGGATTCGGCCCAGTTTCGATGACGATACCATGTTGCATAGAATCAATATGGACCCTCTTTTTGAAGCTCCGATACCGATATCCCAATCACTGGTACCGGAGATCACACCGAGCAACGATGACCAATCACCCAGAAGGAACAACAGGAATCCGGACGATCGCTTCGATGGTCGCGATTTTCTACTGAAGCGATCCTACTCGTTTGGATTCGAACGGAGCCTGGCGTCCGAGAGGATGGTGATGGAGCCAGTGACGGCGTCTCCGTGGAGATACCGGAGAGGAAGTAGCAGCTTCTGGAACAAACGGCCATCTCCATTTGGGTCATTGGGCAAGTCTAGAGTGTTTTCGTTCAGATATTATAGGGGAATGAAATCACCGTTCTTCCGGCGAAGGGGATTCTTCCCTTTATCAGAATCGAGCATGAGGTACGCCGGCGTGGGAGGAGGAAGCTCATCGCGGCGAAGCAAATCAATAGCAAGCCCCATGTTTCTGAGGTCATCGGCTCTGGCAGCGGTGGGCGTGGCGGCTTTCTCGTCGAGCCGGCTCAGATGTGGCGATCCCGAGGCGTTACTGTCACCGGAGAGGTTTAACCGCAGATG 1232 0.5211 MMRMVMVPSQPPYRQWAPSPSPISSPSPSLSALVNEISSPPTSPVDFSPPLIAMVVVVATAFLVVTYSRLISRHLVPPILHLFRRWRRRRGRSYLPSSSGDLDSLPYDSPFEAIDGPRVFSPYGLDESVIKTIPFSLYTTKSNGRFEESRRDCAVCLLEFEDDEYVRTLPVCSHTFHVDCIDVWLRSHANCPLCRAGVLCAESPFRPMMAARIRPSFDDDTMLHRINMDPLFEAPIPISQSLVPEITPSNDDQSPRRNNRNPDDRFDGRDFLLKRSYSFGFERSLASERMVMEPVTASPWRYRRGSSSFWNKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSMRYAGVGGGSSSRRSKSIASPMFLRSSALAAVGVAAFSSSRLRCGDPEALLSPERFNRR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00241 410 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 17 380 - -
Bva13g00241 410 CDD RING-H2_PA-TM-RING 152 195 - -
Bva13g00241 410 SUPERFAMILY RING/U-box 141 200 - -
Bva13g00241 410 SMART ring_2 153 194 IPR001841 -
Bva13g00241 410 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 17 380 IPR044675 -
Bva13g00241 410 MobiDBLite consensus disorder prediction 243 267 - -
Bva13g00241 410 Pfam Ring finger domain 152 195 IPR001841 -
Bva13g00241 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 199 IPR013083 -
Bva13g00241 410 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00241 Bva-Chr13 1152299 1154415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00241 44 410 C3H Transcription Factor Family AT3G18930 50.374 1.89e-96 293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00241 13 1152299 1154415 Bva13g00241 13 1152299 1154415 ECH