Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00232 ATGGAGAACGATTATATTAGCAGCGACGATGATTATCAATACTCCGATCAGGAGTCCATGGACGGGTTTGAAAACGAGGAGTCCGATTTTAAGTTGGTCACTGTGAAGGGTCCCACAACTCAGCGTTTGCAGGTGATTACAAATGAATCTCTTCTAATTGCACAGAAAGAAGATTTGCGTAGAGTAATGGATATGCTATCAGTTACAGAGCAACATGCGCGTACACTTCTTATTTATCATCGTTGGGATGTGGAGAAGCTGTTTTCCGTGTATGTAGATCGGGGGAAAGATTTCTTGTTTGCTGAAGCTGGCGTCAGTCTGGATGAACATCGTGCTTCTGAGTCATCTTTGTCATCTTCGATAATGTGTGATATCTGCATGGAGGATGTTCCTAGTGATGAATCAACAAGAATGGACTGTGGTCACTGTTTTTGCAACaattGTTGGACGGAACATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAACGTATTAGGTGCATGGCCCATAAATGCAATGCCATTTGTGATGAAGCTGTCGTGAGAACTTTAGTCAGTAAGAAGCAGCCTGATATGGCAGAGAAATTTGAACGCTTTCTACTTGAATCTTACATTGAGGATAATAAGAGAGTTAAATGGTGCCCAAGCACTCCACATTGTGGGAATGCAATACGTACTGAGGATGATCAATTATGTGAGGTAGAATGTTCATGTGGTTTACAGTTTTGTTTCAGTTGCTTATCAGAAGCGCACTCTCCTTGTTCTTGTTTGATGTGGGAACTTTGGGCTAAGAAGTGTCAAGATGAATCGGAGACTGTTAATTGGATGACAGTTCATACTAAACCTTGTCCCAAGTGCCACAAACCTGTGGAGAAGAACGGTGGTTGCAACTTGGTTAGCTGTATCTGTGGCCAAGCATTTTGTTGGCTATGTGGTGGAGGTACTGGCAGAGAGCATACCTGGACCAGTATAGCTAATCACAGCTGTGGTCGCTATAAAGAAGGCCAAGAGAAAAAATCTGAGCGGGCAAAACGGGATCTTTATCGGTATATGCACTATCACAACCGCTATAAAGCTCACGCAGATTCTTTCAAGCttgaaagcaaattaaaagaGACTATACAAGGAAAGGTTGCTATTTCTGAAGGGAAGGATTCTAGGGTCAGAGATTACAGCTGGGTAAATAATGGACTCTGCAGACTTTTCCGATCAAGGCGTATTCTATCATATTCGTACGCATTTGCATTTTATATGTTTGGAGATGAGCTGTTTAAGGATGAAATGACAGACAAGGAAAGGGAAATAAAGCAGCACTTATTTGAGGATCAGCAGCAGCAGCTTGAGTCAAATGTTGAAAGGCTCTCCAAAATTTTGGAGGAGCCCTTTGATCAGTTTACAGATGATAAGGTTATGGAGATAAGGATGCAAGTGATCAATATTTCAGTAATTATTGACAATCTTTGTCAGAAAATGTATGAGTGCATTGAGAATGATTTGTTGGGTTCTCTCCAGCTTGGCACCCACAATATAGCTCCATACAAGTCGAAGGGCATAGACAGGGCATCAGAACTTCCAGTTTATTGGACCAATAAAGCCGGTGGAACGGAAGTTGATCGGCCTTCTGGGTCTGGGAGTTCAGATGAAATTGGATGCTCTTCTCGTAAGCGTGCTAGAAAGGAGGGTGTTAGTGCTAGTGCTGGCCTTTTTGATCTAAACTTGCCAGCAGAGGTTGTAGACAGAAATTA 1745 0.4172 MENDYISSDDDYQYSDQESMDGFENEESDFKLVTVKGPTTQRLQVITNESLLIAQKEDLRRVMDMLSVTEQHARTLLIYHRWDVEKLFSVYVDRGKDFLFAEAGVSLDEHRASESSLSSSIMCDICMEDVPSDESTRMDCGHCFCNNCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRTLVSKKQPDMAEKFERFLLESYIEDNKRVKWCPSTPHCGNAIRTEDDQLCEVECSCGLQFCFSCLSEAHSPCSCLMWELWAKKCQDESETVNWMTVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGGTGREHTWTSIANHSCGRYKEGQEKKSERAKRDLYRYMHYHNRYKAHADSFKLESKLKETIQGKVAISEGKDSRVRDYSWVNNGLCRLFRSRRILSYSYAFAFYMFGDELFKDEMTDKEREIKQHLFEDQQQQLESNVERLSKILEEPFDQFTDDKVMEIRMQVINISVIIDNLCQKMYECIENDLLGSLQLGTHNIAPYKSKGIDRASELPVYWTNKAGGTEVDRPSGSGSSDEIGCSSRKRARKEGVSASAGLFDLNLPAEVVDRN 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00232 581 Pfam IBR domain, a half RING-finger domain 194 256 IPR002867 -
Bva13g00232 581 SMART ibrneu5 264 329 IPR002867 -
Bva13g00232 581 SMART ibrneu5 194 256 IPR002867 -
Bva13g00232 581 MobiDBLite consensus disorder prediction 1 20 - -
Bva13g00232 581 SUPERFAMILY RING/U-box 194 262 - -
Bva13g00232 581 SUPERFAMILY RING/U-box 119 206 - -
Bva13g00232 581 Pfam Ariadne domain 333 581 IPR045840 -
Bva13g00232 581 Gene3D - 252 500 - -
Bva13g00232 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 209 IPR013083 -
Bva13g00232 581 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 517 IPR031127 GO:0004842|GO:0016567
Bva13g00232 581 MobiDBLite consensus disorder prediction 533 562 - -
Bva13g00232 581 SUPERFAMILY RING/U-box 264 321 - -
Bva13g00232 581 ProSiteProfiles Zinc finger RING-type profile. 123 171 IPR001841 -
Bva13g00232 581 ProSiteProfiles TRIAD supradomain profile. 119 333 IPR044066 -
Bva13g00232 581 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00232 Bva-Chr13 1121995 1125500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00232 63 546 ARIADNE family AT2G16090 72.690 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00232 K11968 - gmx:100783343 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00232 13 1121995 1125500 Bva13g00232 13 1121995 1125500 ECH