Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00195 ATGAATTCATGTCATTTGCACTCTCCACGCTCCTCTCTGCTTCTGCAATCCCTCTGCTATCCAATTTGCACTATCTCCTCGTCCTCCATAGTCAGCTGCCAAAACGCAAATGACCCAAATAAACAACAACAGCTCCTTCTCCGCAGACAGAACTCCAAATCCACGGCCTTTCTCCTTCACAAACTCTCTCATGGGAACGACGAGGACCACCAAGTCCTGCAATCTCATCCCCAATCTAGTGACCTGCAAGATTCTATGCCCAGTGAAGAAAAGATTAAACTTTTGGAACTTTCCCTTGTGAGGAGAAGGACCCCTCAGTTTCCTGGCTCCATCTATGTTCAGTCTCCTAGCGATCCTGATGTGGGTTCTTCTCTGCCGCTTCTACGGACTCTTTTACAAGGAGAAGTTTCCGAAGAAGACGACGGGGAGATGATAATGCGTGCGCTTGAGATTCGCAGGAAGGTGACCATGGAGATTTTCAAAGAAGCCATGCGAAAGGGCAAGTTTGGAATCACATACGCTACCAATTTGGCTAGCAGATTGCCTGGTTTTATCGATTATATCATGATTGAAGCTGCTTCCATGAAAAGATTACCGGAATTTTCGCACACCACGTTCAATTTACGCGCCAAAACAGTCATAGAGGACTCACGAGTTGTACCACTTATCAGATGGTTGAAGCATAATTCACTATCATATCCTAAGATAGCAAAGCTCATTTTAATGTCGAAAGGGAAACTTGAGTCCATAAGGCGTCTTGCTGAATGGTTGAAGTCAGTACATGTGAAAGGTGAATTTCTTGGGGTTGCACTTGTTAGAGCTGGAGAAAATATTCTAGAACGCAGCAATGAAGAACTTGATGAGACTGTTGAGTATTTAGAGACCATGGGAGTTAGGAGGGACTGGATGGGCTACGTCATTAGTCGATGTCCTGAATTGTTGTCTTACAGCATGGAAGAAGTGAAGACTCGCGTAGGGTTTTATGTAGATATGGGTTTGAATGAGAATGACTTCGGCACAATGGTCTTTGATTATCCTAAAGCACTTGGTTACTTTACTCTGGAAGAGATGAACCAAAAGGTTAATTACATAAAGGAGTTTGGGCTTAAGAGCGAGGATGTTGGTAGACTACTAGCATTTAAGCCACAACTGATGGGTTGTAGCATTGAAGAAGGATGGAAACCTCTTGTTAAGTATTTGTACTATTATGGAATAACCCGAGATGGGATGAGGAGAATGCTTACCCTTAAACCAATGGTCTTTTGCATTGATTTGCAGACGACTATTGTGCCAAAGGTACGATTTTTTCAGGAACTAGGGGTTCGAGATGATGCAATCGGAAACATGCTTGTTAAGTTTCCTACTTTATTAACATACAGCCTCCACAAGAAGATTAGACCAGTGGTCATATTCTTGATGACCAAAGCTGGAGTCAGTGAGAAAGATATTGCCAAGGTTGTAGCTTTGGGACCGGAGCTCCTTGGTTGCAGCGTTGTACACAAGCTTGAAGtgaatgtaaaatattttctatcacTTGGTATACGTCTTCGACAACTGGGAGAGATGATTGCTGATTTCCCAATGCTACTCAGATACAATATAGATGTTCTTCGTCCCAAGTATACTTATTTGCGGAAAACCATGGTCCGGCCTTTGCATGATCTCATTGAGTTTCCACGGTTTTTCAGCTATTCTCTGGAGGGCCGAATCATTCCAAGACACAAGGTTCTGGTAGAGAATcagattaattttaagttgCGATACATGTTGGCCAGCAGTGATGAACAATTCAGGACATTAGTTGAGGCTACAGTTAAAAAGCGCCGCAGATTTCAATCTGTTGTCATGAATGAGGATGTTAGTGAACACCAAACATG 1877 0.4241 MNSCHLHSPRSSLLLQSLCYPICTISSSSIVSCQNANDPNKQQQLLLRRQNSKSTAFLLHKLSHGNDEDHQVLQSHPQSSDLQDSMPSEEKIKLLELSLVRRRTPQFPGSIYVQSPSDPDVGSSLPLLRTLLQGEVSEEDDGEMIMRALEIRRKVTMEIFKEAMRKGKFGITYATNLASRLPGFIDYIMIEAASMKRLPEFSHTTFNLRAKTVIEDSRVVPLIRWLKHNSLSYPKIAKLILMSKGKLESIRRLAEWLKSVHVKGEFLGVALVRAGENILERSNEELDETVEYLETMGVRRDWMGYVISRCPELLSYSMEEVKTRVGFYVDMGLNENDFGTMVFDYPKALGYFTLEEMNQKVNYIKEFGLKSEDVGRLLAFKPQLMGCSIEEGWKPLVKYLYYYGITRDGMRRMLTLKPMVFCIDLQTTIVPKVRFFQELGVRDDAIGNMLVKFPTLLTYSLHKKIRPVVIFLMTKAGVSEKDIAKVVALGPELLGCSVVHKLEVNVKYFLSLGIRLRQLGEMIADFPMLLRYNIDVLRPKYTYLRKTMVRPLHDLIEFPRFFSYSLEGRIIPRHKVLVENQINFKLRYMLASSDEQFRTLVEATVKKRRRFQSVVMNEDVSEHQT 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00195 625 Gene3D Transcription termination factor 3, mitochondrial 379 613 IPR038538 -
Bva13g00195 625 PANTHER CGI-12 PROTEIN-RELATED 69 618 IPR003690 GO:0003690|GO:0006355
Bva13g00195 625 SMART mt_12 375 406 IPR003690 GO:0003690|GO:0006355
Bva13g00195 625 SMART mt_12 520 550 IPR003690 GO:0003690|GO:0006355
Bva13g00195 625 SMART mt_12 552 583 IPR003690 GO:0003690|GO:0006355
Bva13g00195 625 SMART mt_12 339 370 IPR003690 GO:0003690|GO:0006355
Bva13g00195 625 SMART mt_12 484 515 IPR003690 GO:0003690|GO:0006355
Bva13g00195 625 SMART mt_12 447 479 IPR003690 GO:0003690|GO:0006355
Bva13g00195 625 SMART mt_12 411 442 IPR003690 GO:0003690|GO:0006355
Bva13g00195 625 SMART mt_12 304 334 IPR003690 GO:0003690|GO:0006355
Bva13g00195 625 SMART mt_12 269 299 IPR003690 GO:0003690|GO:0006355
Bva13g00195 625 Pfam mTERF 234 365 IPR003690 GO:0003690|GO:0006355
Bva13g00195 625 Pfam mTERF 344 597 IPR003690 GO:0003690|GO:0006355
Bva13g00195 625 MobiDBLite consensus disorder prediction 67 87 - -
Bva13g00195 625 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF2, CHLOROPLASTIC 69 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00195 Bva-Chr13 945896 949866 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Bva13g00195 mTERF 8e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00195 K15032 - jre:109011184 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00195 13 945896 949866 Bva13g00195 13 945896 949866 ECH