Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00159 ATGAAGCTATTTGCCGAAGGAAAAGAGTGTAACAGCTCTCAAGATTCTTCAAAATTGCATGATCGTGATGATAAAGCATACAGGCGAAAAAGACAAACACTTGATGATTTTGACTTGTACGCTATTCCCAAAATGCTGAAAGGGTTAGATACAAGTAAGTTTGGAAGTGTGGCAAAAGATATAGAAGCTCTTTGTGCTAGAAGGTCGCAAATCCTGAAACATGATCCCCTGATGAATTCCAAAAGTCTAAATAGACTTTGTGAACAGTCAAATTCAAAGAATTGGAGAGCTAATCAGATAGCACAAGCCAGGGCCATTAGTTTACAGGATGGCCGTCCCTCGGATGATACATCAGCAGTAACACCACCTGTTATATATCTTAGTTCGGATGATGAACATAGTGGAGATACAAGGCATTCTCATCCGTTTTTAAAGCAGGCTGTGCCGAAAGAGACTGCTTGTAAGGTTTCCGTGGAAGTCTTAACGGTTGAAGATGATTTACAGAGCAAAGCTCAACAGGGGGAGGAGGTAAACGGAGGCCAAAGcaatgttggaataaataaTGGTACAGATCTTGCTACAGGAGACGATCAAGTAATCCTGGAAAATAATATCCAAGATTTCTCAGGAAAGGAAGGATATAATGACATCAAAGCTGAAGATGATAGAATGGCAGATTCAGAGGACAAATCTCCAACGGAAAGTGTGGTTCTGAACAGAAATCTCCAAGCATTCTcaggaaaggaaaattacaTTGAAACTGAAGACACAAGAATGACAGATAAGGAGAGCAAATCTCCTATGAGAAATTTGGTTCTGGAAAATAGTCTCCAGACTTACTCACGAAAGAAAAGATGCCATGAAATTGAAACTGAAGACCAAAGAATGGCATATATGGAGGGCAGCTCTTTAATGGAAAATTTGGCACAACCGGAACTCAAAACTGATAATCAGAACCTTGGATACGGAAATACATGTGCAGAAAATGATATTGCGGATAAAGATGATTTGGCAAATTTATGGAGTGAGATGGCGGTTGCATTAGGATGTAGcaaggaattttcttttaagGATATTAATGGAGATCCTTCAACGGTTGAGCGGGCAGAAGATGAAGGGTGTGATCATTCTTTAGTCTTAAAGGATGATATTGGTTATGTATGTCGAATTTGTGGAATTATTAAGACAGGAATTGAATCTGTCTTTGAGTTCTCATACAATAAGGGCAAAAGGACTTCACGAACTTATGCTTCTGAAACTCGAAATACAAGTGACAGAGGATCAACCAAGATATTACCTATTAGAGTTAAATCTTCTATAGAAGAACTAACGGTAACTGAAGTTGCTGCTCACCCAAGGCATATGAGGCAAATGAAACCCCATCAATTGGAgggcttcaattttttatgtagcAATCTCATAGCTGATAATCCAGGCGGTTGCATCCTAGCTCATGCTCCAGGTTCTGGAAagacttttattattataagttttatgCAGAGTTTCCTTGCAAGGTCCCCCAATGTTCGACCACTAGTTGTTCTGCCAAAAGGAATTTTGGCTACATGGAGGAAAGAATTCCAGATTTGGCAAGTGGAGGACACTCCATTGTAtgatttttatacttttaaagcAGATAATCGGGCTCAGCAGCTGGGAGTATTGAGAAAATGGGTAGAACAGAAAAGTATCATGTTTCTGGGTTATCAACAATTTTCTACTATCATTTGCGACAATGGGACAGACAAGGCAGCAGTAGAATGTCGAGAAATTCTACTGAAAATCCCTACAATACTTATTCTAGATGAAGGTCATACTCCAAGGAATGAAGACACTAATACGCTTCAGTCTCTTGCAAGAGTTGAAACACCTCTTAAAGTTGTATTATCAGGCACTCTGTACCAAAACCATGTGAAGGAGGTATTCAATATTCTGAATCTTGTTCGACCGAAGTTCATGAAACTACAGACTTCTCGTGACGCTGTTAGGCGCATAATGTGCAAAGTGGAGATACAAGGAACAAAAAAGCTGTCCTCAGAGTCAACATTCTTTGATTTGGTGGAGCAAACACTACAACAGAAGGATGATTTTAAAAGGAAAGCTGCTGTCATACAAGATCTTCGTGGGATGACCAGCAAGGTCCTTCATTACTATAAAGGTGACTTTCTCGAAGAGCTTCCAGGTCTTGTTGATTTCACTTTGATACTCAATCTCAGcaaaaagcagaaaagagAAGTTGAAAACTTAAAGTCAGACTCAGTCTCCATCTTCAAGAGAATTTGTTTGGGAAGTCTCTTGTATGTTCACCCTTGTTTGAAAgctttttcaaagaaaaacccCTCAAACGGAGATAAGGGCTGTTCCATTGACGGAGAAGAGATGGACATCatggtaaaaaaattgattgtagAAGAAGGGGTGAAAACAAAGTTCTTTCTTGAGATACTGAGTCTCTGTGAATCAGCTAGTGAGAAGCTGTTGGTATTTAGCCAGTATATCCTGCCCCTGAAACTTTTTGAGAGATTGGCAATTAAATCAAGGGGCTGGAGTCgagataaagaaatttttatgataacaGGAGATTCAAGAAATGAACAAAGGGAATGGTCAATGGAACGTTTTAACAACTCTCCTTATGCTAAAGTGTTCTTTGGGTCAATCAAAGCTTGTGGGGAAGGAATTTCTCTGGTGGGTGCTTCTCGCATCATCATATTGGATGTTCATCTGAATCCATCAGTAACTCGCCAAGCAATAGGCCGTGCATTCCGACCCGGGCAGAAGAGAAAAGTGTACACTTACAGATTGATTGCTGCTGATTCACCTGAGGAAGAAGATCACAGCACCTGCTTCAGAAAGGAGTTGATATCAAGGATGTGGTTTGAGTGGAACGACAAATCTATGAACCAAGAATTTGATATGAAGGCTGTTCATGTTGACGAGTGTGGCGATCCGTTCTTGGAGAGTATGTCACTGCGGGAAGATTTAAAGGTTATATACAAGAGGTTAGATTTCTCTTCTTA 3020 0.3795 MKLFAEGKECNSSQDSSKLHDRDDKAYRRKRQTLDDFDLYAIPKMLKGLDTSKFGSVAKDIEALCARRSQILKHDPLMNSKSLNRLCEQSNSKNWRANQIAQARAISLQDGRPSDDTSAVTPPVIYLSSDDEHSGDTRHSHPFLKQAVPKETACKVSVEVLTVEDDLQSKAQQGEEVNGGQSNVGINNGTDLATGDDQVILENNIQDFSGKEGYNDIKAEDDRMADSEDKSPTESVVLNRNLQAFSGKENYIETEDTRMTDKESKSPMRNLVLENSLQTYSRKKRCHEIETEDQRMAYMEGSSLMENLAQPELKTDNQNLGYGNTCAENDIADKDDLANLWSEMAVALGCSKEFSFKDINGDPSTVERAEDEGCDHSLVLKDDIGYVCRICGIIKTGIESVFEFSYNKGKRTSRTYASETRNTSDRGSTKILPIRVKSSIEELTVTEVAAHPRHMRQMKPHQLEGFNFLCSNLIADNPGGCILAHAPGSGKTFIIISFMQSFLARSPNVRPLVVLPKGILATWRKEFQIWQVEDTPLYDFYTFKADNRAQQLGVLRKWVEQKSIMFLGYQQFSTIICDNGTDKAAVECREILLKIPTILILDEGHTPRNEDTNTLQSLARVETPLKVVLSGTLYQNHVKEVFNILNLVRPKFMKLQTSRDAVRRIMCKVEIQGTKKLSSESTFFDLVEQTLQQKDDFKRKAAVIQDLRGMTSKVLHYYKGDFLEELPGLVDFTLILNLSKKQKREVENLKSDSVSIFKRICLGSLLYVHPCLKAFSKKNPSNGDKGCSIDGEEMDIMVKKLIVEEGVKTKFFLEILSLCESASEKLLVFSQYILPLKLFERLAIKSRGWSRDKEIFMITGDSRNEQREWSMERFNNSPYAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKRKVYTYRLIAADSPEEEDHSTCFRKELISRMWFEWNDKSMNQEFDMKAVHVDECGDPFLESMSLREDLKVIYKRLDFSS 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00159 1006 CDD SF2_C_SNF 799 936 - -
Bva13g00159 1006 SMART helicmild6 832 925 IPR001650 -
Bva13g00159 1006 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 472 651 IPR014001 -
Bva13g00159 1006 PANTHER PROTEIN CHROMATIN REMODELING 35 13 1001 - -
Bva13g00159 1006 Pfam Helicase conserved C-terminal domain 810 924 IPR001650 -
Bva13g00159 1006 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 811 979 IPR001650 -
Bva13g00159 1006 MobiDBLite consensus disorder prediction 170 195 - -
Bva13g00159 1006 Gene3D - 727 992 IPR027417 -
Bva13g00159 1006 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 447 666 IPR027417 -
Bva13g00159 1006 SMART ultradead3 454 665 IPR014001 -
Bva13g00159 1006 MobiDBLite consensus disorder prediction 1 26 - -
Bva13g00159 1006 Pfam SNF2-related domain 478 742 IPR000330 GO:0005524|GO:0140658
Bva13g00159 1006 Gene3D - 429 694 IPR038718 -
Bva13g00159 1006 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 967 IPR027417 -
Bva13g00159 1006 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 13 1001 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00159 Bva-Chr13 779708 783777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00159 822 953 RAD5 or RAD16-like Gene Family AT5G43530 34.848 4.05e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva13g00159 SNF2_N 8.1e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00159 K10875 - qsu:112032212 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00159 13 779708 783777 Bva13g00159 13 779708 783777 ECH