Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00158 ATGGCAACTTTTTACACTAGTTCAGGCAGTCAGAGAGATTCTGCACCTATGTTTTGTCAAGGGGAACCTCTGCCTAATTCATATCCTGAGACACCAATTCTTCCTAGTAACATAACGTTGTATATGAACTCTGGGTCATATTCAGATGCAATTCCTGCGCAGGAAGGAATTTTGGCAAACCTAGGTGGGTCGCAAAGCGGGGAACATGATTTCATTGCATGGAGGGAGGGTAGAAATGAGATGCTAGTTACACATTCAGCGGATGGAAAGAACTTGCAGGGTCAGGGATTATCTCTCAGTCTGGGAACCCAAATACCTTCTGGAATTCAAATCCCATCTATCCATGATCAGAATCCTAATccaaattttgattcatttttggGTCCTAATCCATCAATTCCAGGTGATGGGGGCTATAAAAGTAGCTCATCTAGACATTCTGAAACTTTACCACCTGGTTTTCCTGAAGGTAATCAAGAATTGCACAGGGAGGGTTCTTCCGTGCATGGAATGCCCGGTGTTGCAAAAACACTTCCTAATTCCAAATACCTGAAGGCAGTACAACAACTGCTTGATGAAATTGTAGACATCCGAAAAGCTGTAAAACAACCTGATGTGAAAAGTCATAGAATACACGAGGACTGTTCCAAGGAGGATGATGGGAgaccagaaaatgaaaaggcaCCTGCTAATGCGATGACTGATCATCAAGACTCAGCTAATAACTCTTCTTGTGAGCTTTCACATGCTGAAAAACAAGATCTGCATAACAAGCTAACGAAACTTCTATCAATGTTGGATGAGGTTGACAGAAGGTACAAACAATATTATCATCAGATGCAAATTGTGGAATCATCATTTGACGTGATAGCAGGTCGTGGTGCAGCTAAACCATACACAGCGCTTGCTCTTCAAACCATTTCTCGCCATTTCCGGTGCTTGCGGGATGTAATCACTGGCCAAATCAGTGCAACCCAGAAGAACCTTGGAGAGCAAGATGcttcagaaaataataaaggagTTGGAATATCAAGACTCCGATTCGTGGACCAACAGATTCGGCGACAGAGGGCTCTTCAGCAACTTGGTATAATGCAACATGCTTGGAGGCCGCAGAGGGGGCTGCCTGAAAGCTCTGTTTCCACTCTTCGCGCTTGGTTGTTCGAGCATTTCCTTCATCCCTATCCAACGGATTCTGATAAGATCATGCTAGCTAGACAGACAGGCTTGACTAGAAGTCAGGTTTCAAATTGGTTTATAAATGCAAGAGTGCGTCTATGGAAACCTATGATTGAGGAAATTTACAAGGAAGAGATTGGTGATACCGACGTGGATTCCAGTTGTTCATCTGAAAATGCATCCAAAGTAACAAAAAGTGATTTGAAGACCTCCAATGATATGGGTGATGATTTGCAACACGGTCAAAGCTCAATGGCTAATAAGAATTTCAATGATGGAGAAGCAAAAGACTTCAGATCAGATCACGTTCTTGCTACAGAAATCACAGGATCTTCTGGATTAGCTACTTTCAATAGTGGAAACCATGAGGGTGAAACTGAATTCCGGTCAGTAAAGCAAGCTGACGTGCAAAGGCCAAATTTTGATGATTGTGGTTTCTACCCAGTTGTTCAGACGAGTGGAGGCAGTGAAAGGTTTATGTCAGTTGCTGCTGCATGCCAAGCGTCAGAGTTGGGAAGGTTTGGGACAGGTAGTGGAGTATCTCTCACATTAGGTTTGCAGAATTGTGAGGCTGGTAATTTTAGGTCTGACGAAACTCATCATAGTTTTGTTGCCATGAGGGAAGATGACGTCTACAATTCTGCTGCGGCTTCTTCAATAGGAGCTGAGACGGCAGAATTTGAGCGTATCACTAATAGAAACCAGCAGCGAAGGTTCTCATCACCTCATTTATTACGTGACTTTTA 1925 0.4203 MATFYTSSGSQRDSAPMFCQGEPLPNSYPETPILPSNITLYMNSGSYSDAIPAQEGILANLGGSQSGEHDFIAWREGRNEMLVTHSADGKNLQGQGLSLSLGTQIPSGIQIPSIHDQNPNPNFDSFLGPNPSIPGDGGYKSSSSRHSETLPPGFPEGNQELHREGSSVHGMPGVAKTLPNSKYLKAVQQLLDEIVDIRKAVKQPDVKSHRIHEDCSKEDDGRPENEKAPANAMTDHQDSANNSSCELSHAEKQDLHNKLTKLLSMLDEVDRRYKQYYHQMQIVESSFDVIAGRGAAKPYTALALQTISRHFRCLRDVITGQISATQKNLGEQDASENNKGVGISRLRFVDQQIRRQRALQQLGIMQHAWRPQRGLPESSVSTLRAWLFEHFLHPYPTDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMIEEIYKEEIGDTDVDSSCSSENASKVTKSDLKTSNDMGDDLQHGQSSMANKNFNDGEAKDFRSDHVLATEITGSSGLATFNSGNHEGETEFRSVKQADVQRPNFDDCGFYPVVQTSGGSERFMSVAAACQASELGRFGTGSGVSLTLGLQNCEAGNFRSDETHHSFVAMREDDVYNSAAASSIGAETAEFERITNRNQQRRFSSPHLLRDF 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00158 641 Pfam Homeobox KN domain 386 425 IPR008422 GO:0003677|GO:0006355
Bva13g00158 641 MobiDBLite consensus disorder prediction 468 483 - -
Bva13g00158 641 CDD homeodomain 369 430 IPR001356 GO:0003677
Bva13g00158 641 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 81 596 - -
Bva13g00158 641 MobiDBLite consensus disorder prediction 442 485 - -
Bva13g00158 641 ProSiteProfiles 'Homeobox' domain profile. 366 429 IPR001356 GO:0003677
Bva13g00158 641 MobiDBLite consensus disorder prediction 445 461 - -
Bva13g00158 641 Pfam Associated with HOX 178 319 IPR006563 -
Bva13g00158 641 Coils Coil 252 272 - -
Bva13g00158 641 MobiDBLite consensus disorder prediction 203 251 - -
Bva13g00158 641 MobiDBLite consensus disorder prediction 114 174 - -
Bva13g00158 641 MobiDBLite consensus disorder prediction 203 231 - -
Bva13g00158 641 SUPERFAMILY Homeodomain-like 370 435 IPR009057 -
Bva13g00158 641 MobiDBLite consensus disorder prediction 232 248 - -
Bva13g00158 641 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 81 596 - -
Bva13g00158 641 SMART prehox3 172 320 IPR006563 -
Bva13g00158 641 SMART HOX_1 369 433 IPR001356 GO:0003677
Bva13g00158 641 Gene3D - 365 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00158 Bva-Chr13 775002 779059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00158 27 641 Homeobox Transcription Factor Family AT4G34610 42.457 1.06e-131 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Bva13g00158 POX 2.2e-48 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00158 13 775002 779059 Bva13g00158 13 775002 779059 ECH