Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00157 ATGGCTAAACCGAAGGCTGGAAGACGAACCCTAGACTCATACACAGTCAAACACATGAACAAATCAATTAGAGCCGGCGAGTGCGTGCTCATGCGGCCATCTGATCCTTCGAAGTCATCGTACGTGGCGAGGATAGATCGGATCGAAGCGGACTCGCGAGGCGCTAACGTGAAGGTTCACATCCGTTGGTACTACCGACCAGAGGAGTCAATCGGTGGCCGTCGCCAGTTCCATGGTTCTAAGGAGGTTTTTCTATCTGATCACTATGATGTTCAGAGCGCCGACACGATCGAAGGCAAGTGTACGGTTCACAGTTTTAAGAGCTACACGAAGCTTGACGCTGTTGGAAATGAAGATTTCTTCTGCCGCTTCGAGTACAATTCGGCCACCGGGGCCTTCAATCCTGATAGAGTCGCCGTGTATTGTAAATGTGAGATGCCATACAATCCTGATGATCTAATGGTCCAGTGTGAAGGTTGCAGTGACTGGTTTCATcctacttgtatagacatgactGTGGAGGAAGCTAGAAGACTTGATCACttcttttgtgaaaattgtTCTGCGGAAGGTCAAACGAAGTTGCAAAATTCTCATTCTTCCTCGAGACACTCTGATACGAAGGTCGATACAAAACGTCGTCGAAGGTG 650 0.4631 MAKPKAGRRTLDSYTVKHMNKSIRAGECVLMRPSDPSKSSYVARIDRIEADSRGANVKVHIRWYYRPEESIGGRRQFHGSKEVFLSDHYDVQSADTIEGKCTVHSFKSYTKLDAVGNEDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPTCIDMTVEEARRLDHFFCENCSAEGQTKLQNSHSSSRHSDTKVDTKRRRR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00157 216 PANTHER OS08G0421900 PROTEIN 1 216 - -
Bva13g00157 216 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Bva13g00157 216 PANTHER CHROMATIN REMODELING PROTEIN SHL 1 216 IPR045205 GO:0006325|GO:0035064
Bva13g00157 216 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Bva13g00157 216 MobiDBLite consensus disorder prediction 195 216 - -
Bva13g00157 216 Pfam BAH domain 23 136 IPR001025 GO:0003682
Bva13g00157 216 SMART BAH_4 21 137 IPR001025 GO:0003682
Bva13g00157 216 Pfam PHD-finger 141 189 IPR019787 -
Bva13g00157 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Bva13g00157 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 205 IPR013083 -
Bva13g00157 216 Gene3D - 2 133 IPR043151 -
Bva13g00157 216 SMART PHD_3 141 188 IPR001965 -
Bva13g00157 216 SUPERFAMILY FYVE/PHD zinc finger 131 193 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00157 Bva-Chr13 768946 772845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00157 31 127 Core DNA Replication Machinery Family AT4G12620 27.835 4.11e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva13g00157 BAH 3.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00157 - - mnt:112093853 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00157 13 768946 772845 Bva13g00157 13 768946 772845 ECH