Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00143 ATGGCAAAGGGAAAGTCAAGCTCAGGCCGCCAAAGAATTCCTATAGAGAAAATACCAAAGAAAAGTCATTTGCAGGTTACATTCTCGAAACGCCGTTCAGGGCTTTTCAAGAAAGCTAGCGAGCTTTGCACTCTTTGCGGAGTTGAGATAGCAATCATAGTGTTTTCTCCAGCTGATAAGGCCTTCTCTTTTGGCCACCCAGAAGTTGAGTCTATCATCGATCGCTTTCTTACTCGTAACTCTCCACTCGACTCAGTTGCCGACCACCAACTAGTTGAAGCCCACAGAAATGCTAATATTCGCGATCTCAACGCGCAGCTCACGCAGCTCGTAAATCAATTGGAGACTGAGAGAAAGCGAGGAGAAGAGCTTGATCAAGTGAGGAGAGTTAGGCAAAGGGAATGCTGGTGGGAGAGCCCTATTGAAGAACTTGGCTTGAACGAGTTGCAGCAGTTGAAGTTTTCAATGGAGGAGCTGAAGAACAATGTTGCAAAACAGGCTAACAAAGTGTTGATGGACCAGACTGGCATGTCTTCATACTATGATGCTTTTGACAGAAAACCCGAGATCAAGACTCCTACTCTCCCTAATGCTTATAACATCAATTTTCGATATGGCTATCTTTG 626 0.4489 MAKGKSSSGRQRIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPEVESIIDRFLTRNSPLDSVADHQLVEAHRNANIRDLNAQLTQLVNQLETERKRGEELDQVRRVRQRECWWESPIEELGLNELQQLKFSMEELKNNVAKQANKVLMDQTGMSSYYDAFDRKPEIKTPTLPNAYNINFRYGYL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00143 208 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Bva13g00143 208 Coils Coil 97 124 - -
Bva13g00143 208 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 179 - -
Bva13g00143 208 SUPERFAMILY SRF-like 9 81 IPR036879 GO:0003677|GO:0046983
Bva13g00143 208 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Bva13g00143 208 PANTHER MADS BOX PROTEIN 7 179 - -
Bva13g00143 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Bva13g00143 208 Coils Coil 149 169 - -
Bva13g00143 208 Gene3D - 89 183 - -
Bva13g00143 208 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Bva13g00143 208 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Bva13g00143 208 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Bva13g00143 208 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Bva13g00143 208 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00143 Bva-Chr13 698080 698706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00143 5 181 Type I MADS-box Gene Family AT5G60440 50.838 4.83e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva13g00143 SRF-TF 2.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00143 - - lja:Lj0g3v0067779.1 281.952