Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00108 ATGGCGAAGAAAGCTGAACGGTCTAGGAAGTCTCCCTCGTCCCCAAGAGCTTCTTCTGCCTCAGCCAGAACCTCCGCAAGTGCTTCCAAGGACAAACTAGTATTGAGGGTCAAATCAAATGATAGGATGAAGAGACCTGTCAGGCAGACTAATTCAGCAAAGAAACCCAAAGCAAAGCTaaagaagaaccaaaaaaagttacaggctaagaagccaaagaaaccTCCTACTGCTTTTTTCTACTTCTTGGAGGATTTTCGTAAACAATTTCAAGAGGAGAATCCAGATGTCAAGTCAATGCGTGATATTGGCAAGGCATGCGGAGAGAAGTGGAAAACAATGACGTATGAGGAGAAGGTTCAGTACTATGACGTAGCGACAGAAAAACGAGCAGAATTTGACGGAGCAATGCTAGAATTTAACAAGAGAATGGAAAGTGGAGAGACCGAAGAAGAGGAGGATTCAGATTCAGAGTTTACTGTTTACTG 488 0.3996 MAKKAERSRKSPSSPRASSASARTSASASKDKLVLRVKSNDRMKRPVRQTNSAKKPKAKLKKNQKKLQAKKPKKPPTAFFYFLEDFRKQFQEENPDVKSMRDIGKACGEKWKTMTYEEKVQYYDVATEKRAEFDGAMLEFNKRMESGETEEEEDSDSEFTVY 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00108 162 SMART hmgende2 71 142 IPR009071 -
Bva13g00108 162 MobiDBLite consensus disorder prediction 12 28 - -
Bva13g00108 162 MobiDBLite consensus disorder prediction 1 74 - -
Bva13g00108 162 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 1 159 - -
Bva13g00108 162 Pfam HMG (high mobility group) box 72 140 IPR009071 -
Bva13g00108 162 Gene3D High mobility group box domain 65 157 IPR036910 -
Bva13g00108 162 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 72 141 IPR009071 -
Bva13g00108 162 MobiDBLite consensus disorder prediction 49 72 - -
Bva13g00108 162 MobiDBLite consensus disorder prediction 143 162 - -
Bva13g00108 162 CDD HMGB-UBF_HMG-box 77 137 - -
Bva13g00108 162 PANTHER HIGH MOBILITY GROUP B PROTEIN 14 1 159 - -
Bva13g00108 162 MobiDBLite consensus disorder prediction 34 48 - -
Bva13g00108 162 SUPERFAMILY HMG-box 65 145 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00108 Bva-Chr13 507057 510259 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Bva13g00108 HMG_box 1.6e-17 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00108 - - gmx:100809401 181.03