Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00105 ATGGGTCGCAGAAAGATCAAGATAGCATTCTTGAAGGACAAAAGTATAAGGCAGGTTACCTTCTCCAAACGTAGGCAAGGCATTTTCAAGAAAGCAAATGAATTGGCTATCTTGTGTGGTGCTGGAGTTGCCGTGGTTACATTCTCTCCTGGTGGCAGGGCATTTTCATTTGGGAACCCAGGCGTTAATGCTGTGATTGATAGCTATCTCTATCAATCACATGGTGATGATGGCTTTTCGTTGCAGGAGCAGAAGCAGCTTGCACATCTGGAGAAGCAACTCAAggttgaaaaggaaaagggcaAGAAGGTTGACAAGTTGTTGAATGAAAACAAAGTGACTGAACTCATGTTGTCCATTGATGAGCTCAACTGGGATGATCTTCAAAAGTTGAAAATCTCACTAGAAGAGCTCAGTCATTATGTGAATTCGTGTTTGGAAGACAGGGAAGCTTCCACTTCTTTGCTGCTCCTAGCAGAGAAACCAGTGAACGCAGCAGATCTTCAGGTTGCTAAAATTGCTTG 524 0.4179 MGRRKIKIAFLKDKSIRQVTFSKRRQGIFKKANELAILCGAGVAVVTFSPGGRAFSFGNPGVNAVIDSYLYQSHGDDGFSLQEQKQLAHLEKQLKVEKEKGKKVDKLLNENKVTELMLSIDELNWDDLQKLKISLEELSHYVNSCLEDREASTSLLLLAEKPVNAADLQVAKIA 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00105 174 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bva13g00105 174 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva13g00105 174 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva13g00105 174 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Bva13g00105 174 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva13g00105 174 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva13g00105 174 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva13g00105 174 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 167 - -
Bva13g00105 174 Coils Coil 80 100 - -
Bva13g00105 174 PANTHER MADS BOX PROTEIN 2 167 - -
Bva13g00105 174 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00105 Bva-Chr13 501360 501884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00105 1 161 Type I MADS-box Gene Family AT2G34440 37.356 2.12e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva13g00105 SRF-TF 8.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00105 - - cmax:111495601 140.198