Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00090 ATGGATAAGGAGCCTCTGCTCCCATATTTTAGCCCAAGGAGGAAAACTACGCCCCCAACCAATCTGTTCCCATTACCAGAGAACGATGAGTTGCTTGTTCCTCTGACCCCTTCAGAGTTCAAGGAACGCCTGATTTTTGGCTCTTGTAATTCCCCAAAGGAGCCTTCCTCCTTAATTGAGGCCTTAACacttacttcttcttcttcttcccaagACCTCGCAACTCCACAAGCTGctcaatcccaatcccaacaATCTTGGCTCAATGACCCCAATTACCCATGGAGCAAAACCAACCTCCATCGTTCCAAAACTGCGCCAGCCATGGCCGTGATAAGCGATTTTAACCCCCAATCTGCGGTTCCTAGACCTCAATTTAGTTCCCAGTCAATTGTTCGCCAAGCTGTTATTCTCCTTgttgtttatttatcattGGGGGTGACCATATATTGGTTTAATAGGCATCATTTTATAGCAAGTGAGACTCATCCTGTCGTGGAtgcattatatttttgtatagtAACAATGTGTACAATAGGATATGGAGACATAACTCCAAATAGTACAGCAACAAAGCTGTTCTCTATAATGTTTGTATTGGTAGGTTTTGGGTTTATTGACATATTGCTCAGTGGGATGGTCAGTTATGTTCTTGATTTACAAGAGAATTACTTGCTTAGAACGGTGAAGAGTAATGGTGAGAAGGATGCGAGATCCTATATAATTGATGTGAAGAAAGGGAGAATGAGAATTAGGATGAAGGTGGGTTTGGCATTGGGGGTTGTGGTCCTCTGTATTACAGTTGGTGTTTTTGTTATGCATTATGTGGAGAAGCTCGGATGGTTGGattcattttatctttcagTTATGTCAGTTACAACTGTTGGGTATGGTGATCAGGCATTCAAGTCATTATCTGGTCGTATATTTGCTGCAATTTGGTTGCTTGTATCGACGCTTGCAGTGGCCCGAGCTTTCCTATATTTGGCCGAGGCAAGAGTGGATAAGCGGCATAGGAATATGGCAAAGTGGGTTCTTGGTCATGATATGACTGTTGCCGAGTTTCTTGCAGCAGACATAGACAATAATGGTTTTGTGAGTAAATCAGAATTTGTTATATACAAGCTCAAGGAGATGGGAAAAGTCTCAGAGAAAGACATTATGCAGATCAGTGAGAAGTATGATAGGATAGACACGGGCAACTGTGGAAAAATAACTCTTGCTGATCTTATGGAGGGTCATCATTG 1247 0.397 MDKEPLLPYFSPRRKTTPPTNLFPLPENDELLVPLTPSEFKERLIFGSCNSPKEPSSLIEALTLTSSSSSQDLATPQAAQSQSQQSWLNDPNYPWSKTNLHRSKTAPAMAVISDFNPQSAVPRPQFSSQSIVRQAVILLVVYLSLGVTIYWFNRHHFIASETHPVVDALYFCIVTMCTIGYGDITPNSTATKLFSIMFVLVGFGFIDILLSGMVSYVLDLQENYLLRTVKSNGEKDARSYIIDVKKGRMRIRMKVGLALGVVVLCITVGVFVMHYVEKLGWLDSFYLSVMSVTTVGYGDQAFKSLSGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRNMAKWVLGHDMTVAEFLAADIDNNGFVSKSEFVIYKLKEMGKVSEKDIMQISEKYDRIDTGNCGKITLADLMEGHH 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00090 415 ProSitePatterns EF-hand calcium-binding domain. 359 371 IPR018247 -
Bva13g00090 415 SUPERFAMILY Voltage-gated potassium channels 128 217 - -
Bva13g00090 415 MobiDBLite consensus disorder prediction 1 25 - -
Bva13g00090 415 PRINTS Two pore domain K+ channel signature 174 202 IPR003280 GO:0005267|GO:0016020|GO:0071805
Bva13g00090 415 PRINTS Two pore domain K+ channel signature 293 302 IPR003280 GO:0005267|GO:0016020|GO:0071805
Bva13g00090 415 SUPERFAMILY Voltage-gated potassium channels 245 354 - -
Bva13g00090 415 Gene3D - 128 228 - -
Bva13g00090 415 Pfam Ion channel 137 217 IPR013099 -
Bva13g00090 415 Pfam Ion channel 262 330 IPR013099 -
Bva13g00090 415 Gene3D - 261 323 - -
Bva13g00090 415 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 80 410 IPR003280 GO:0005267|GO:0016020|GO:0071805
Bva13g00090 415 Gene3D - 324 415 - -
Bva13g00090 415 SUPERFAMILY EF-hand 354 411 IPR011992 -
Bva13g00090 415 PANTHER TWO-PORE POTASSIUM CHANNEL 3 80 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00090 Bva-Chr13 413565 417709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00090 4 413 Ion Channels AT4G18160 63.232 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00090 K05389 - gmx:100804249 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00090 13 413565 417709 Bva13g00090 13 413565 417709 ECH
Bva14g00146 14 735665 737757 Bva13g00090 13 413565 417709 ECH