Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00079 ATGCTGCTTTTTCACTTCGTTGGGGCCAATCGCGGTGACGCTCGTGCTGTGTACCCTTCTTTCCCTCTCAGAAAAGATTCCCATTGGGGCGATACCCATGTGGTTTTAGGTGTCAACTTGTCAAGCCTTTTGTCTGAGGATCCTATATATTTAATTCGAGCTTTAGGGTTTGGGTTTACTGAATTTGTGTACCCTTTGCAGaagaaaagtgaTGCGATGAAGCAGTCTTTTGATAGTTCATCTCCAGGACCTACCAAGATTCCCTCTGTAAATATATCAAAGGAAGTGAGACGTGGTGCATGGGAGATTTTACCTGGTTCAGATGCATACCATGCGTCATTTGATGCTACCCTTTTCTCCAGTTCATTACCTGTTTTGCCACACGAAAAGTTGAACTTGAATGACACTGAAAATGGTTATCAATCTGTTGATGACATCTCATCTAGCTTTCAACAGCTCCATCAAGACATAGAGGGTAATGATTCACTTGAAGAGCTTGATAGCCATGCAATTGGACCCTTGCTTCCTGATGACGAGGAGGAGCTTTTAGCTGGCATAGCGGATGATTTTGACCTAAGTGGCTTGCCTGGTTCCCTGGAGGACTTGGAAGAGTATGATCTTTTTGGTAGTGGTGGAGGTATGGAATTAGAAACTGACCCACAGGAAAGTCTTAGTGTGGGTATGTCAAAATTAAGTTTCTCTGATGGTTCTATTGGTAATGGCGTGGCCCATTATTCTTTTCCTAATGGTGTGGGAACTATTGCTGGAGAACATCCATATGGAGAACATCCTTCTCGAACATTATTTGTTCGAAATATTAACAGTAACGTGGAAGATTCTGAACTGATAGCACTTTTTGAGcaaTATGGTGATATTAGAACCCTCTATACTGCATGTAAACATCGTGGATTTGTAATGATATCCTATTATGATATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCGCTGCGGCGCAGGAAACTTGACATTCATTTCTCAATACCAAagGATAATCCATCAGACAAGGATATTAATCAGGGTACTTTGGTGGTGTTTAATTTGGATCCATCTGTTTCAAATGAAGACCTTCGTCAAATATTTGGGGCATATGGTGAGGTCAAAGAGATAAGGGAAACACCACATAAGAGGCATCATAAGTTCATTGAATATTATGATGTTAGAGCTGCTGAAGCAGCACTCAAGTCATTGAACAGGAGTGACATAGCTGGTAAACGCATAAAACTAGAACCAAGTCGTCCTGGTGGAGCTCGTCGAAATTTAATGCTGCAACTAAATCAAGAGCTTGAACAAGATGAGTCACGGAGTTTCCGGATGCAAGTGGGTTCACCACTTACTAACTCCCCACCAGGTAACTGGATGCCGCTTAACAATCCCATTGAACACAATGCAATGCAAACTATGAGTAAATCTCCCGGATCTAGGATCATGAGCCCAACAACAGGTAACCATTTACCTGGTTTAGCTTCAATACTACAACCTCAGGTATCAAATACTGTCAAGGGTACAACTGTTGGCAAGGACGTAGGAAGGAGTATTCATGGAGATCACCTGTATGCTACCAACAGTTCATCACATGGAGCTGCATTTCAGTCACATTCATTACCAGAGCCAAAATTCACCCAATATCAGGGAGCACTTTCCTCTTTTGGTCCATCAACTTCCAATGGATCCTCAATTGAAACTTTGTCTGGCCCACAATTTCTATGGGGAAGTTCAAACGTATACTCAGAGCACACCAAACCTTCAGCTTCAGCTTGGACAAGGCCATCTGTGGGACGTCCATTTACATCTAATGGGAAGACCCATGCCTTCCCATATGCAGGTCAGAATAGTTCCTTCATTGGTTTGTCCCAGCATCACCACCATCATCACGTTGGCTCTGCTCCATCCGGTGCTCCTTTTGAGAGGCATTTCGGTTTGCTTTCTGAGTCACCGGATGCATCTTTCATGAATCATGTTGCTTATGGCGGCATGAGCTTAGGACACAATGATGGAAATTACATTGGTACAGTGGGTGGTTCTGTTAATGCTGGCATTGCTATACCAAGAAATATGTCAGAAAATGGCTCTTCAAACTTCAGAATGAGATCTTCTCCTAGGCTTAGCCCAGTGTTTTTGGGTAATGGTCCTTACCCAGGGCTGCCACTTAACACATTTGAGGGTTTGACTGATCGTGGGCGGAGCAGAAGGATAGAAAACAATGGGACCCAAGATGATAGCAAGAAACAATTTCAGCTTGACCTGGATAAGATTAAAAGTGGTGAAGACACAAGGACTACTTTAATGATAAAGAACATCCCAAATAAATACACTTCAAAAATGTTACTAGCTGCCATTGATGAATATCATAGGGGTACCTATGATTTTCTCTATCTGCCGATCGATTTTAAGAATAAATGCAACGTGGGCTATGCATTTATTAACATGCTCTCACCATCACTCATAATTCCATTCTATGAGTCATTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAGAAAGTTGCCTCTTTGGCATATGCTCGAATCCAAGGAAAGGCTGCCCTTGTTAGTCACTTCCAAAATTCCAGTTTAATGAATGAAGATAAGCGCTGCCGCCCTATTGTTTTCCATTCAGAGGGTCCTGAAGCTGGCGATCagATCATACAAGAGCATCTTCCCTCCAACAATTTGAATATCCACGTCCTTAGGCCAAATGAGTCACATTCAAGTGATTTTCCTGGAAGCCCTCCGAAGGATGGCCCTTCGGAGAACTTGGAGATAAGTTA 2801 0.4241 MLLFHFVGANRGDARAVYPSFPLRKDSHWGDTHVVLGVNLSSLLSEDPIYLIRALGFGFTEFVYPLQKKSDAMKQSFDSSSPGPTKIPSVNISKEVRRGAWEILPGSDAYHASFDATLFSSSLPVLPHEKLNLNDTENGYQSVDDISSSFQQLHQDIEGNDSLEELDSHAIGPLLPDDEEELLAGIADDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQESLSVGMSKLSFSDGSIGNGVAHYSFPNGVGTIAGEHPYGEHPSRTLFVRNINSNVEDSELIALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELEQDESRSFRMQVGSPLTNSPPGNWMPLNNPIEHNAMQTMSKSPGSRIMSPTTGNHLPGLASILQPQVSNTVKGTTVGKDVGRSIHGDHLYATNSSSHGAAFQSHSLPEPKFTQYQGALSSFGPSTSNGSSIETLSGPQFLWGSSNVYSEHTKPSASAWTRPSVGRPFTSNGKTHAFPYAGQNSSFIGLSQHHHHHHVGSAPSGAPFERHFGLLSESPDASFMNHVAYGGMSLGHNDGNYIGTVGGSVNAGIAIPRNMSENGSSNFRMRSSPRLSPVFLGNGPYPGLPLNTFEGLTDRGRSRRIENNGTQDDSKKQFQLDLDKIKSGEDTRTTLMIKNIPNKYTSKMLLAAIDEYHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYESFNGKKWEKFNSEKVASLAYARIQGKAALVSHFQNSSLMNEDKRCRPIVFHSEGPEAGDQIIQEHLPSNNLNIHVLRPNESHSSDFPGSPPKDGPSENLEIS 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00079 933 MobiDBLite consensus disorder prediction 909 933 - -
Bva13g00079 933 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 351 424 IPR000504 GO:0003723
Bva13g00079 933 CDD RRM2_MEI2_like 350 420 - -
Bva13g00079 933 Gene3D - 255 349 IPR012677 -
Bva13g00079 933 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 353 418 IPR000504 GO:0003723
Bva13g00079 933 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 332 IPR000504 GO:0003723
Bva13g00079 933 CDD RRM3_MEI2_like 772 857 IPR034454 -
Bva13g00079 933 PANTHER RNA RECOGNITION MOTIF-CONTAINING 74 930 - -
Bva13g00079 933 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 339 IPR000504 GO:0003723
Bva13g00079 933 PANTHER PROTEIN MEI2-LIKE 2 74 930 - -
Bva13g00079 933 SMART rrm1_1 267 335 IPR000504 GO:0003723
Bva13g00079 933 SMART rrm1_1 771 847 IPR000504 GO:0003723
Bva13g00079 933 SMART rrm1_1 352 420 IPR000504 GO:0003723
Bva13g00079 933 CDD RRM1_MEI2_like 265 341 IPR034453 -
Bva13g00079 933 SUPERFAMILY RNA-binding domain, RBD 771 856 IPR035979 GO:0003676
Bva13g00079 933 SUPERFAMILY RNA-binding domain, RBD 263 426 IPR035979 GO:0003676
Bva13g00079 933 Pfam RNA recognition motif 2 769 865 IPR007201 -
Bva13g00079 933 Gene3D - 350 448 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00079 Bva-Chr13 364725 370727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00079 261 459 Eukaryotic Initiation Factors Gene Family AT1G71770 26.222 1.80e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00079 - - gmx:100800877 1420.22