Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00078 ATGAGCTTCGGAAGCAGAGAGCAGGATGCAGCCTTTTCAACATCAGCCGCAAGCAACATGAAGACCAACACTAAGACCAGCACCTTGTTCTTCAACGACAAGGCACTAACTCAGTACAGTGCTGATGCTGAGATTTTAGCTGAGTTTGACCAGTCCGGTGTGTCTGGTAAATTTTTGGACTATACAACGTCTGCTATTTATCCTCCCAAATTGGTGTCGGAAGAGAAAATGGTTACTTATTTGTCGAAAATCCAAAGAGGGGGTCTTATTCAGCCCTTTGGGTGCATGATTGCAATTGAAGAACCCACTTTCAGAATCATCAGCTACAGTGAGAATTGCTTTGAATTGTTGAGTTTAAACAGACAGTTTGATTCGAAGCAGTTTAAAGGTCTCATTGGAGTTGATGCTACTACACTCTTCACGCCTTCTTCTGGGGCTTCCCTTGTAAAAGCTGCAGCTTCTAGGGAGGTTTCACTTTTGAACCCAATTTTGGTCTATTCAAGGGCAACCCAGAAGCCTTTCTATGCTATAATGCATAGAATTGATGTGGGGATCGTGATTGATTTGGAACCTGCAAAGTCTAGTGATCCTGCATTCTCACTTGCTGGTGCCGTGCAGTCTCAGAAGCTAGCTGTTAGGGTAATCTCAAGGCTGCAATCTCTTCCTCGGGGAGATATTGGTGTTTTATGTGATACTGTTGTTGAGGAAGTGCAGAAGCTTACCGGGTATGACAGGGTTATGGTTTATAAGTTCCATGATGATTGTCATGGAGAAGTTGTATCTGAGATAAGAAGGTCAGATTTAGTGCCCTATTTGGGTTTGCATTATCCAGCCACGGATGTCCCTCAAGCTGCACGCTTTTTGTTCAAGCAAAATCGGGTTAGGATGATTTGTGATTGCAACGCAAACCCAGTTAAGGTCATTCAAAGTGAAGAGTTAAGGAAGCCTCTTATCTTGGTCAATTCAACCCTTCGGTCACCACATGGATGTCACACACAATACATGGCTAACATGGGCTCCATTGCCTCTTTGGTAATGGCAATTTTGGTTAATGGGAATGATACAACAAGGCTTTGGGGTCTGCTAGTTTGTCATCATACTTCACCGCGCTATGTGCCTTTTCCACTTCGCCATGCTTGTGAGTTCCTTATGCAGGCTTTTGGACTGCAGCTTTACATGGAGATTCAGTTGGCATCACAAATGGCAGAGAAGAAAATTCTGAGAACTCAGACCTTACTCTGTGACATGCTCCTCCGTGATGCCCCATTTGGTATTGTGACTCAGTCTCCCAGTATCTTGGACCTTGTTAAGTGTGATGGGGCTGCAATGTATTATGATGGGAAGTGTTGGTTGTTAGGCGTAACCCCAACTGAGACACAGGTGAAAGACATTGCAGAATGGCTAGTTAATTGTCATGGCGACTCAACAGGTTTGAGCACAGATAGTTTGGCAGATTCTTGTTATCCAGGTGCTGCTTCACTGGGGGAGGCAGTTTGTGGCATGGCCACAGCAAGAATCAATTCGAGAGATTTCCTGTTCTGGTTTAGGTCTCACACTGCTGAGGAAGTAAAATGGGGAGGAGCCAAACACCATCCAGAGGACAAGGATGATGGTGGAAAATTGAACCCAAGATCATCATTTAAGGCTTTTCTTGAAGTCGTCAAAAGCAAAAGTTTGCCTTGGGAGGTGTCAGAAATCAATGCCATCCATTCATTACAGCTTATAATGAGAGACTCATTTCGGAACACTGAGAACTCTGGTCCTAAGACTCTAAATTATCTGCAGCAGCAGCAGAGTCACACTGGAACGGGTGGGGTGGATGAACTCAGTTCAGTTACATATGAAATGGTTAGATTAATTGAAACAGCAACGGTTCCAATTCTGGGAGTTGACTCAGCTGGTCTAATCAATGGATGGAATGCAAAAATTGCTGAATTGGCAGGCCTGCCAGCAAGTGAAGCTATGGGAAAATCCCTCGTAAATGAAGTACTCCATGAGGACTCACGtgaaaaagtcaaaaacattTTACGCAGAGCCTTGCAAGGTCAGGAGGACAAAAACgttgaattgaaattaagaCAATTTGGGTTTCATCAAGAAAAGTCAGTTGTGCATATTATAGCCAACGCGTGCACAAGTAGGGATTACACAAATGCCGTTGTTGGGGTGTGCTTTGTGGGTCAAGATATCAGTAACGAGAAAGTTGTTCTGGATAAATTCATCAAGTTGGAAGGTGATTACAAAGCAATTATACAGAGTCTTAGTCCACTGATTCCACCCATTTTTGCTTCTGATGAGAATGCTTGCTGCTCTGAATGGAATGCAGCAATGGAAAGGTTAACTGGTTGGAAGAGAGATGAAGTTATAGGAAAAATGCTTCCTGGGGAAATCTTTGGAAGTTTATGTCAGTTGAAAGGTCAAGATACTCTGActaattttgtgattttattgtaTCGAGGAATCGGTGGTCAAGACTCTGAGAGGTTCCCTTTcggattttttaataaaacggGAGAATTCATAGAGGTTTTCTTAACAGCTAACAAGAGGACGGATCCTGGTGGAAATATAGTTGGTTGTTTCTGCTTCCTGCAGATTGTATCACCAGACCAGTATCAGCACTCAGAAGGATACAAATCAAAACGAAGGAATCGCCCTTCAGAATTTGAACAGTTGGCTTATATATTACAAGAGACGAAGAATCCTTTAAATGGCCTACGCTTCATGCACAAACTTCTGGGAAAAACCGCCGTCTCAGAAAGCCAGAAGCAATTCCTTGACACTAGCGATGCATGTGAAAGACAGATCATGGCAATCATTGAGGATACAAATTTAGGAAGTCTAGAAGAAGGCACCTTGCAGCTAAACATGGAGGAATTCGTTCTGGGGAATATTTTAGATGCCATTGTCAGTCAAGTCATGATCTTGATAAGAGCAAAAAACCTGCAGCTGTTTCACGAAATTCCAGACGAGATAAAAACTATCAAACTATACGGTGATCAAATTAGGCTTCAGGTCGTCTTATCTGATTTTTTGCTCAATGTGGTCAGTCACACACCATCTCCTAACGGCTGGgtagaaatcaaaatttcaccTGGTCTAAAGATTATACAGGATGGCAGTGAGCTTATACATCTGCAGTTCAGAATGACTCATGCTGGTCAAGGTCTACCTTCCACTGTTCTTCAGGATATGTTCGAAGGAGGAAACCAATGGAATTCACCGGAAGGTCTAGGGTTAAACATGTCCAGGAAAATTCTCAGCAAGATGAATGGTCGTGTCCACTATGTAAGAGAACATAACAAGTGCTACTTCCTTATTGATCTTGACCttagaacaagaaaagaaaggcaaaGGGTTTTGCTAGAAGATAGAAGCGTGATGACTTA 3389 0.4178 MSFGSREQDAAFSTSAASNMKTNTKTSTLFFNDKALTQYSADAEILAEFDQSGVSGKFLDYTTSAIYPPKLVSEEKMVTYLSKIQRGGLIQPFGCMIAIEEPTFRIISYSENCFELLSLNRQFDSKQFKGLIGVDATTLFTPSSGASLVKAAASREVSLLNPILVYSRATQKPFYAIMHRIDVGIVIDLEPAKSSDPAFSLAGAVQSQKLAVRVISRLQSLPRGDIGVLCDTVVEEVQKLTGYDRVMVYKFHDDCHGEVVSEIRRSDLVPYLGLHYPATDVPQAARFLFKQNRVRMICDCNANPVKVIQSEELRKPLILVNSTLRSPHGCHTQYMANMGSIASLVMAILVNGNDTTRLWGLLVCHHTSPRYVPFPLRHACEFLMQAFGLQLYMEIQLASQMAEKKILRTQTLLCDMLLRDAPFGIVTQSPSILDLVKCDGAAMYYDGKCWLLGVTPTETQVKDIAEWLVNCHGDSTGLSTDSLADSCYPGAASLGEAVCGMATARINSRDFLFWFRSHTAEEVKWGGAKHHPEDKDDGGKLNPRSSFKAFLEVVKSKSLPWEVSEINAIHSLQLIMRDSFRNTENSGPKTLNYLQQQQSHTGTGGVDELSSVTYEMVRLIETATVPILGVDSAGLINGWNAKIAELAGLPASEAMGKSLVNEVLHEDSREKVKNILRRALQGQEDKNVELKLRQFGFHQEKSVVHIIANACTSRDYTNAVVGVCFVGQDISNEKVVLDKFIKLEGDYKAIIQSLSPLIPPIFASDENACCSEWNAAMERLTGWKRDEVIGKMLPGEIFGSLCQLKGQDTLTNFVILLYRGIGGQDSERFPFGFFNKTGEFIEVFLTANKRTDPGGNIVGCFCFLQIVSPDQYQHSEGYKSKRRNRPSEFEQLAYILQETKNPLNGLRFMHKLLGKTAVSESQKQFLDTSDACERQIMAIIEDTNLGSLEEGTLQLNMEEFVLGNILDAIVSQVMILIRAKNLQLFHEIPDEIKTIKLYGDQIRLQVVLSDFLLNVVSHTPSPNGWVEIKISPGLKIIQDGSELIHLQFRMTHAGQGLPSTVLQDMFEGGNQWNSPEGLGLNMSRKILSKMNGRVHYVREHNKCYFLIDLDLRTRKERQRVLLEDRSVMT 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00078 1129 ProSiteProfiles Histidine kinase domain profile. 894 1113 IPR005467 -
Bva13g00078 1129 CDD PAS 757 865 IPR000014 -
Bva13g00078 1129 ProSiteProfiles PAS repeat profile. 612 683 IPR000014 -
Bva13g00078 1129 Coils Coil 673 693 - -
Bva13g00078 1129 SMART pas_2 745 814 IPR000014 -
Bva13g00078 1129 SMART pas_2 614 681 IPR000014 -
Bva13g00078 1129 PIRSF Phytochrome_conventional 8 1120 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bva13g00078 1129 Pfam GAF domain 225 395 IPR003018 GO:0005515
Bva13g00078 1129 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 999 1111 IPR003594 -
Bva13g00078 1129 CDD HisKA 890 942 IPR003661 GO:0000155|GO:0007165
Bva13g00078 1129 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 225 385 IPR016132 -
Bva13g00078 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 862 IPR035965 -
Bva13g00078 1129 PANTHER PHYTOCHROME E 28 1118 - -
Bva13g00078 1129 TIGRFAM sensory_box: PAS domain S-box protein 619 734 IPR000014 -
Bva13g00078 1129 Pfam PAS fold 615 730 IPR013767 GO:0006355
Bva13g00078 1129 Pfam PAS fold 746 865 IPR013767 GO:0006355
Bva13g00078 1129 Pfam Phytochrome region 408 583 IPR013515 GO:0006355|GO:0009584
Bva13g00078 1129 Gene3D PAS domain 83 328 - -
Bva13g00078 1129 SUPERFAMILY GAF domain-like 205 391 - -
Bva13g00078 1129 SMART HisKA_10 887 951 IPR003661 GO:0000155|GO:0007165
Bva13g00078 1129 PANTHER TWO-COMPONENT HISTIDINE KINASE 28 1118 - -
Bva13g00078 1129 Gene3D PAS domain 612 734 - -
Bva13g00078 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 84 195 IPR035965 -
Bva13g00078 1129 ProSiteProfiles PAS repeat profile. 746 798 IPR000014 -
Bva13g00078 1129 Gene3D - 400 573 IPR043150 -
Bva13g00078 1129 PRINTS Phytochrome signature 325 346 IPR001294 GO:0006355|GO:0009584
Bva13g00078 1129 PRINTS Phytochrome signature 140 162 IPR001294 GO:0006355|GO:0009584
Bva13g00078 1129 PRINTS Phytochrome signature 240 259 IPR001294 GO:0006355|GO:0009584
Bva13g00078 1129 PRINTS Phytochrome signature 425 445 IPR001294 GO:0006355|GO:0009584
Bva13g00078 1129 PRINTS Phytochrome signature 510 529 IPR001294 GO:0006355|GO:0009584
Bva13g00078 1129 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355|GO:0009584
Bva13g00078 1129 PRINTS Phytochrome signature 543 561 IPR001294 GO:0006355|GO:0009584
Bva13g00078 1129 PRINTS Phytochrome signature 634 649 IPR001294 GO:0006355|GO:0009584
Bva13g00078 1129 PRINTS Phytochrome signature 615 631 IPR001294 GO:0006355|GO:0009584
Bva13g00078 1129 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355|GO:0009584
Bva13g00078 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 618 726 IPR035965 -
Bva13g00078 1129 SUPERFAMILY GAF domain-like 403 580 - -
Bva13g00078 1129 SMART gaf_1 225 405 IPR003018 GO:0005515
Bva13g00078 1129 Gene3D - 206 556 IPR029016 -
Bva13g00078 1129 CDD PAS 623 730 IPR000014 -
Bva13g00078 1129 ProSitePatterns Phytochrome chromophore attachment site signature. 325 334 IPR013516 -
Bva13g00078 1129 Gene3D PAS domain 759 873 - -
Bva13g00078 1129 Gene3D - 930 1105 IPR036890 -
Bva13g00078 1129 Pfam PAS fold 80 192 IPR013654 GO:0006355
Bva13g00078 1129 Pfam His Kinase A (phospho-acceptor) domain 890 951 IPR003661 GO:0000155|GO:0007165
Bva13g00078 1129 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 955 1106 IPR036890 -
Bva13g00078 1129 SMART HKATPase_4 999 1113 IPR003594 -
Bva13g00078 1129 CDD HATPase_Phy-like 998 1111 IPR044767 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00078 Bva-Chr13 359354 363862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00078 13 1113 Histidine Kinase Gene Family AT4G18130 63.408 0.0 1469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00078 K12123 - gmx:100808192 1798.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00078 13 359354 363862 Bva13g00078 13 359354 363862 ECH