Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00051 ATGGCGGCGAATTCATCAAGTAACGGAACCAATGATGTTGCCGTGAACATAAACGACGATCTGAATCGCTGTGCCTCCAAAAACGAAGACTCAGACATCTATCTAACTGTGCCTTTCTTGCAGAAGTTGGTAGCAGAGTTGGTGGGCACATACTTCTTGATATTTGCAGGTTGTGGTTCAGTTGTCGTGAACAAGGGATATGCTAATGTGGTGACGCTTCCAGGGATAGCAATAGTTTGGGGCCTGGTTGTGATGGTGCTTGTTTACTCTGTTGGTCATATATCTGGTGCCCATTTTAACCCTGCTGTCACCCTTGCTTTTGCTTCCACCAGGAGGTTCCCGTTCAAACAGgtCCCAGCTTATATAGCAGCTCAGGTTCTGGGATCCACACTAGCAAGTGGAACTCTCAGATTGCTATTTACTGGCAGCCACAACTTCTTTACAGGAACTCTTCCAACTGGCTCTAATTTGCAATCTTTTGTGATTGAATTCGTCATCACTTTCTACCTTATGTTTGTAATTTCTGGCGTTGCCACTGATAACAGAGCTATTGGTGAGCTAGCTGGTCTTGCAGTCGGGTCTACGGTGCTATTGAACGTGATGTTTGCCGCGCCAATCTCGGGAGCATCAATGAACCCAGCAAGAAGCTTAGGCCCTGCAATAGTGTCACATGAGTATAGAGGAATATGGATATACATGGTGTCAACAATTCTAGGCGCCGTGGCCGGCGCCTGGGTTTATAACATCATTAGGTACACCGACAAGCCATTGCGTGAGATCACAAAGAGCGCATCGTTCCTTAAAGGAGCCGGCAACTG 818 0.4682 MAANSSSNGTNDVAVNINDDLNRCASKNEDSDIYLTVPFLQKLVAELVGTYFLIFAGCGSVVVNKGYANVVTLPGIAIVWGLVVMVLVYSVGHISGAHFNPAVTLAFASTRRFPFKQVPAYIAAQVLGSTLASGTLRLLFTGSHNFFTGTLPTGSNLQSFVIEFVITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAAPISGASMNPARSLGPAIVSHEYRGIWIYMVSTILGAVAGAWVYNIIRYTDKPLREITKSASFLKGAGN 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00051 272 Pfam Major intrinsic protein 36 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva13g00051 272 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Bva13g00051 272 SUPERFAMILY Aquaporin-like 35 261 IPR023271 -
Bva13g00051 272 TIGRFAM MIP: MIP family channel proteins 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva13g00051 272 Gene3D Glycerol uptake facilitator protein. 4 262 IPR023271 -
Bva13g00051 272 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 270 - -
Bva13g00051 272 CDD MIP 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva13g00051 272 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva13g00051 272 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva13g00051 272 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva13g00051 272 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva13g00051 272 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva13g00051 272 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva13g00051 272 PANTHER AQUAPORIN NIP2-1 1 270 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00051 Bva-Chr13 228581 230700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00051 41 268 Major Intrinsic Protein MIP AT5G37820 65.351 4.81e-106 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00051 K09874 - pop:7455888 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00051 13 228581 230700 Bva13g00051 13 228581 230700 ECH