Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00047 ATGGTTTCGGGGATTGTCTGGGATCGATGGAGGATTGATTCAATTCTTCTGAGATTTTCGGAATCTGGAATTTtgggttttgaaatttgggaTTTGGGAAGCGTGGCTGGAATTGGTGTTTCCATGATGGATGAAGGACAAGGCAGTTCGAGTTCCCTGCCTCCTTTCCTTATGAAGACTTATGAGATGGTAGATGATCCTTCCACAGATTCAGTTGTTTCCTGGAGTGCCAATAATAGAAGTTTCGTTGTATGGAATCCACCAGAATTTTCAAGGGATTTGCTCCCAAGATTCTTCAAGCATAATAACTTCTCTAGTTTCATTCGGCAGCTCAACACATATGGTTTTAGAAAAGTTGACCCAGAACAATGGGAATTTGCCAATGATGATTTTGTTAGAGGTCAACCGCAACTCTTGAAGAATATCCATAGACGAAAGCCTGTTCATAGCCATTCTTTACAGAATCTTCAAGGACAAGTACATGGAGCATCATCATTAACTGATTCAGAAAGGCAGaatttaaaagatgaaatagAGAGGCTTAAACAGGAGAAAGAACGTATTCGTCTAGAGTTACAGAGACATGAAGAAGAGTGGCAAGTATACGAGGTACAAATGCAATGCTCCAAAGAGCGGTTGTCACAGCTGGAACAGAAACAGCAACAGATGGTCTCTTCTATCTCTCGAGTGTTGCAGAAACCTGGGATTGCCTTAGATCTTTTGCCGCTGTCAGAAACCCTGGAGAGAAAACGAAGGTTACCTAGAAGTGGTTACTTCTGTGATGAAGCTTGCACTGAGGATGCGATGAGAGTTTCCCAAATGCTACCCAGAGAGAATTCAGAGAATAGCTGCCCTTTTACGATAAACATGGAGCTATTGGATCAGTTGGAATCGTCTCTGGTCTTTTGGGAGAATATCGCACATGATGGTGGTGACACCTTTATTCAAAGTAGTGCGAGCATGGAATTTGATGAATCTACGAGTTGTGATGATAGTCCAATGGTATCTTCAGTCCAACTTGATGTTGAAGATCCGTCTAAGTCATCAGGAATCGACATGAACTCTGAGCCTGCTGCAACTGCTGCTCCTGAGCCAATTGCGTCACAAGAACATGTGGGAAATACGACTGTGGCAACTGGTGTTAATGATGTATTCTGGGAACAATTCTTGACAGAGAATCCTGGTTCATCTGAAACAAAGGAAGCCCAGTCGGAGAGAAAGGATTCTGATGTCCaggaaaatgaaggaaagCCTACTGATCATGGCAGATTTTGGTGGAACACGAGGAATGTAAATAACCTTCCAGAACAGATGGAACATATTAGTCAAGCAGAGAAAATTTA 1343 0.4103 MVSGIVWDRWRIDSILLRFSESGILGFEIWDLGSVAGIGVSMMDEGQGSSSSLPPFLMKTYEMVDDPSTDSVVSWSANNRSFVVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFVRGQPQLLKNIHRRKPVHSHSLQNLQGQVHGASSLTDSERQNLKDEIERLKQEKERIRLELQRHEEEWQVYEVQMQCSKERLSQLEQKQQQMVSSISRVLQKPGIALDLLPLSETLERKRRLPRSGYFCDEACTEDAMRVSQMLPRENSENSCPFTINMELLDQLESSLVFWENIAHDGGDTFIQSSASMEFDESTSCDDSPMVSSVQLDVEDPSKSSGIDMNSEPAATAAPEPIASQEHVGNTTVATGVNDVFWEQFLTENPGSSETKEAQSERKDSDVQENEGKPTDHGRFWWNTRNVNNLPEQMEHISQAEKI 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00047 447 MobiDBLite consensus disorder prediction 399 422 - -
Bva13g00047 447 ProSitePatterns HSF-type DNA-binding domain signature. 95 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva13g00047 447 Gene3D - 48 146 IPR036388 -
Bva13g00047 447 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 43 428 - -
Bva13g00047 447 MobiDBLite consensus disorder prediction 391 426 - -
Bva13g00047 447 MobiDBLite consensus disorder prediction 342 371 - -
Bva13g00047 447 PRINTS Heat shock factor (HSF) domain signature 107 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva13g00047 447 PRINTS Heat shock factor (HSF) domain signature 56 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva13g00047 447 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva13g00047 447 Pfam HSF-type DNA-binding 56 145 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva13g00047 447 Coils Coil 164 205 - -
Bva13g00047 447 SMART hsfneu3 52 145 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva13g00047 447 SUPERFAMILY "Winged helix" DNA-binding domain 51 145 IPR036390 -
Bva13g00047 447 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 43 428 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00047 Bva-Chr13 217936 219973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00047 43 446 HSF AT4G18880 52.300 2.48e-126 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bva13g00047 HSF_DNA-bind 4.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00047 K09419 - gmx:100798004 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00047 13 217936 219973 Bva14g01559 14 8148818 8150240 BWGD
Bva13g00047 13 217936 219973 Bva13g00047 13 217936 219973 ECH