Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00045 ATGGCTTCAGGGGCTATATTCTCCTCTCTGCGGCGGCGGAGGTCGCCGTCGTTGGAGGCGTTTCTTGCTCCGGTTGACCTCACGGACGTTGCCTTGGTGCAAACCCTTGTCTCGGTTGCCGCTGAGCTCGTTTCCTTATTCTCGGAGAGGTCCTTCTTCTTCCAGCGCAAGAATTCGAGGTCACTTATCAGAAAAGTAGAGATTTTTCAGTTGCTTTTGGAGTATTTGAGCAATTCGAGTGCGGCCCTTCCCTCAACTGCGTTGCTTTGTCTTAAAGAGCTTTATTTGCTACTGTACCGGTCTAAGATTCTTCTTGATTATTGTGTACGATCTAGTAAGTTGTGGCTTTTGCTCCATAACCATTCAATTTCTGGTCATTTCCATGACTTGAACCAAGAAATTTCGACCCTTTTGGATGTTTTTCCCATAAAGGATGTTGAATTGAGTGATGATGTTAGGGAGCAGGTTGAGCTATTGCAGAAACAATCAAGGAGGGCTAAGTTGTATATTGACCAAAAAGATGATGAACTCAGGAGacgcattttattttttcacgaTGAGTTTGAGAATGGGCGGATTCCTGATTATGATGAATTGAGATCATTTTTTGTGGAGAAATTGCAGATTGTGGATGCCAGGAGTTGTAGAAATGAAATTGAGTTTTTGGAGGAGCAGATTGTAAATCACGAGGGAGATGTTGAGCCAACGATTTCTATGCTTAATGGGTTGGTTGCGATGACGCGGTATTGTAGATTTTTGCTTTTTGGATTTGAGGGGGAAGACATGGATATGGGAAATGGAAATCAGAGAAAGCCTAAGAGGAGGTTGATTACACAAGAAATTGCTGAAACATTCTTAACTATTCCAAAGGACTTTTGTTGTCCAATATCATTGGAATTGATGTCAGACCCAGTGATAATCTCCACAGGACAAACTTATGACAGAGGTTCCATATCCAGGTGGATGGAAGAAGGGCATTGTACTTGTCCGAAAACAGGGCAAATGCTTTTCCACACCCGGCTTGTGCCTAACCGGGCTTTAAGGAATTTGATCGTCCAGTGGTGTACCGCTCATGGAGTCCCTTATGAAACACCAGAGGTCATTGATGCTTCGACTGAAAGTTTTGCATCAGCTTCTCCCACCAAAGCTGCCCTTGAAGCCAACAGAGCAACGGCAACGCTTCTCATTCAGCAGTTGGCAAATGGGACAAATGCTGCAAAGACTGTAGCTGCTCAGGAGATACGTCTGCTAGCAAAAACAGGCAAGGAAAATCGGGCGTTCATTGCAGAAGCTGGGGCAATCCCTTATCTGCAGAATTTACTTTCATCTCCTAACGCCATTGCTCAGGAGAATTCTGTAACTGCATTGCTCAATCTTtcaatttatgacaaaaataagagTCGGATCATGGATGAGGAAGCGTGTCTGGATTCAATAGTTGATGTCTTGAGATCTGGACACACAACAGAAGCAAGGGAAAACGCTGCAGCGACATTGTTTAGCCTATCTGCTGTCCATGACTATAAGAAGAGGATTGCAGATATGGTTGGAGCCGTTGAAGCTCTCGCAATGCTGTTATGTATGGGAACAGTACGAGGAAAGAAGGATGCAGTAACAGCTTTATTTAATCTATCAACGCACACTGAGAATTGTGTTAGAATGATAGAAGCAGGGGCAGTAACAGCACTTGTTGGGGCTTTGGGAAATGAAGGAGTTGCTGAGGAAGCAGCTGGTGCCCTGGCCTTGATTGTTCGGCAGCCTACTGGGGCCAAAGCAGTGGTGAAGGAGGAAGCAGCAGTGGCTGGGTTGATAGGAATGATGCGTTGTGGGACACCAAGGGGTAAGGAGAATGCTGTTGCAGCTTTGCTGGAGTTGTGCCGGAGTGGTGGCGCAGCTGCGACAGAAAGGGTGGTCAACGCACCAGCTTTGGCAGGTTTACTTCAAACACTGTTGTTTACGGGGACAAAACGAGCAAGACGTAAAGCAGCTTCACTTGCCAGAGTATTTCAGAGATGTGAAAATGCGTCTTTACATTACGGTGGATTAGGTGTTGGGTACGCATTTGCCAGCAATTCAGCTGCAAATAGAGATACTAGCTTTGCTACTGATGTTTCAGTACCAATGTCCATTTCTGTCCCCGTGTTGTA 2147 0.4476 MASGAIFSSLRRRRSPSLEAFLAPVDLTDVALVQTLVSVAAELVSLFSERSFFFQRKNSRSLIRKVEIFQLLLEYLSNSSAALPSTALLCLKELYLLLYRSKILLDYCVRSSKLWLLLHNHSISGHFHDLNQEISTLLDVFPIKDVELSDDVREQVELLQKQSRRAKLYIDQKDDELRRRILFFHDEFENGRIPDYDELRSFFVEKLQIVDARSCRNEIEFLEEQIVNHEGDVEPTISMLNGLVAMTRYCRFLLFGFEGEDMDMGNGNQRKPKRRLITQEIAETFLTIPKDFCCPISLELMSDPVIISTGQTYDRGSISRWMEEGHCTCPKTGQMLFHTRLVPNRALRNLIVQWCTAHGVPYETPEVIDASTESFASASPTKAALEANRATATLLIQQLANGTNAAKTVAAQEIRLLAKTGKENRAFIAEAGAIPYLQNLLSSPNAIAQENSVTALLNLSIYDKNKSRIMDEEACLDSIVDVLRSGHTTEARENAAATLFSLSAVHDYKKRIADMVGAVEALAMLLCMGTVRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPTGAKAVVKEEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVNAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASNSAANRDTSFATDVSVPMSISVPVL 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00045 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Bva13g00045 715 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Bva13g00045 715 PANTHER U BOX DOMAIN-CONTAINING 11 696 - -
Bva13g00045 715 Gene3D - 391 511 IPR011989 -
Bva13g00045 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Bva13g00045 715 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 696 - -
Bva13g00045 715 SUPERFAMILY ARM repeat 393 669 IPR016024 -
Bva13g00045 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Bva13g00045 715 SUPERFAMILY RING/U-box 276 362 - -
Bva13g00045 715 Coils Coil 212 232 - -
Bva13g00045 715 CDD RING-Ubox_PUB 292 334 IPR045210 -
Bva13g00045 715 SMART arm_5 464 504 IPR000225 GO:0005515
Bva13g00045 715 SMART arm_5 507 546 IPR000225 GO:0005515
Bva13g00045 715 SMART arm_5 421 461 IPR000225 GO:0005515
Bva13g00045 715 SMART arm_5 587 627 IPR000225 GO:0005515
Bva13g00045 715 SMART arm_5 547 585 IPR000225 GO:0005515
Bva13g00045 715 Pfam Armadillo-like 424 564 IPR006911 -
Bva13g00045 715 Gene3D - 512 671 IPR011989 -
Bva13g00045 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00045 Bva-Chr13 206353 209242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00045 1 715 U-box Gene Family AT1G29340 70.572 0.0 965
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00045 - - gmx:100811153 1122.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00045 13 206353 209242 Bva13g00045 13 206353 209242 ECH