Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00044 ATGACTAGGGCTGTTCGCAATAGGATACTCAAGGATGCGAATGGTGACTTTAGTGATCATCTACGCAACCACATCCATTTAACTAATTGTATCCACTTGAAGAACCATATGCACAAGAACAGCCCAATACTGGCTAATAGGTCACTTATGAGGGACCTTGTTGTGCTACAGAGGTCAAGGTCTCTCAGGGACCCTTCTGCAAGTCCTCCGTCTTGGCATTCACCCTCTATTGTTGATGTGCTTTCCAAGAGAGTTGAAAATGATACCATGATTCAGGAGGGAAGAAGGTCAGTAGGTGGCATTGAACGCCGGAAGGAAGGTAGAAGACTATCAGGAACCTCACTACCCTTGGTTATTTTAGGCACATCAAAAGTTGCTCCAGGTGAGGTGACTAGGGGGAATGATGGGGTAGCAGCAAGTAGTGAACGTAGTAGCCGGAATGGAATGGGGAAGGGGAGAAAAGTTGGGAGAGAAGAGTCTGGTAGGAAGAGTGATAAACCTGATCTTTTGGGTGTCAGCGAAGAGCAACCTCTCAATTATGATGGTAAAGAGTTGGCTCAGGATGTTGTTTCAAGGCACTCTGAATCTAAAGATAGAAAGAGTAAACAAATGGGGAAGCATGTTCGTGAAGTTCAAGTTAAGACCCTTTCTGAGCAGCTGAATAATGCCCCTTTGGATAGTGATGATTTAGCATCTTCCAACATTCACGTTCATGGAAGGTATCCTCGACATGAGAAAACGATCAACCGAGAAGCCAGCATACATGGTCATTGCAGTGGACCAAATAAGGTGAAAAGGCGTAAGTTCCGAAGTGCAAGAAGAACTCGGGCTGCTACTGCATCCAGAGATACTGGTGGAGCTGAGAATGAGTTGTCCGTGGCTTCGAACTCGTTAGCTCAAGGTTCAGTCCACAGTAAATATCACGTGGATGAGGCAGATGGGTATGTAGATGAAAATGTCACTAGAGCTCCCAAAAATGGGTGCGGCATTCCTTGGAATTGGTCAAGAATTCATCACAGAGGTAAAACATTCCTTGACATAGCTGGAAGAAGTTTCTCTTGTGGTTTATCTGATTCAAGGCTAAAGAAGGGGACCTTGGCTgccaaaggaagaaatacTTCTGACATGCCTGTGGTATCCGACCACTCAAGCTCGTCTACAAAGTCTAATGCAGAGGCATTGCCTTTACTAGTCGAGGCATCTGTATCTTATGGAAGCAGTGAAAATGCTTGTTGGGGACATGACTATTCTGGGgaacttggtattttttcTGATAACTTGTTCAAGAATGATGTTGATTCTGACCTTGCTTCTGAAGCTAGATCGGGTGATCAGCACAACTTGAGAGGGAATCACCGTAGAAGGCATCAAAGCTTCACACTAAAATACATGCCACGAACCTTTAGAGATATGGTTGGACAGAATTTGGTGGCACATGCTCTTTCAAATGCAGTCATAAGACGGAAAGTTGGGTTGTTATATGTGTTTTACGGACCTCATGGCACTGGAAAAACTTCCTGTGCTCGAATATTTGCCAGAGCTTTAAATTGCCAGTCTTTAGAAAATCCAAAACCTTGTGGCTTTTGCAATTCTTGCATTGCACATGATATGGGTAAGAGTAGAAGTATTAGGGAAGTTTGTCCTATCAGTAATTTTGACTTTGAGAGCATCATGGATCTACTTGACAATATGATTGTTTCCCAACAAACATCGCAGtacaaagtatttattttcGATGATTGTGATACTCTATCAGCTGATTGCTGGAGTGCTATATCAAAGGTCATTGATCGAGCTCCTAGACGTCTGGTTTTTATCCTTGTCAGTTCGAGTCTTGATGTATTGcctcatataataatatccCGGTGTcagaaattcttttttccaaaGCTGAAGGATACagatattatttatacattgcATTGGATTGCAACAAAAGAAGGTCTAGAAATAGATAAGGATGCCCTGAAACTCATTGCATCAAGATCAGATGGTTCATTGAGAGATGCTGAGATGACCCTAGAACAACTGAGCTTGCTTGGTCAGAGAATATCTGTTCCGCTAGTTCAGGAATTGGCAGGGCTTATCTCTGATGAGAAATTGGTTGATCTGCTTGATTTGGCCTTATCTGCAGACACAATCAATACTGTGAAGAATTTGAGAGTAATCATGGAAACTGGTGGAGAGCCATTAGCATTAATGTCACAGCTTGCTACAGTAATTACTGATATACTTGCTGGCACTTACGATTTTACAAAAGATACACAAAGAAGGAAGTTTTTTCGGAGACAACCATTATCCAAAAGGGACATGGAAAAGCTACGCCAAGCTCTGAAAACTTTATGTGAAGCTGAGAAGCAGTTGAGAATTTCTAATGACAAACTAACTTGGCTGACTGCTGCGTTACTTCAACTTGCTCCAGACCAGCAATATATGTTGCCTACTTCATCTGATGTTAGTTTCAATCATAGTCCATTAGCATTGAACAAAGTAGATTTGAGAGAAGCAGCCAGAAAAACTAGCAAACATGCTGAAATTCCTAATAAAGAGAGACGTTTGTCAATGGATGTGAGAATAGAAAATCTCCATGCTGGAAGTTCCGCTGATGGTATGACAAATGGTGTTAGTTCAGAGAGAAAAAGGCATACTGGAGCTAGTGCTGCTCCTCAACTGGCATCTTCACATGTTAGCGAGATGACTAGGATGAATGACAGGCAACAAATCTTTGGTAAAGGTCGTAAAGGAATTGAAGAAATATGGTTAGAGGTGCTTGAGAGGATTGAAGCTCCTGGTCTGAAAGAGTTTTTATATCAAGAAGGAAAGCTGATCTCAGTTAGTTTTGGTGCAGTTTATTCTGCAGCCCCAACTGTGCAGCTTATGTTTAGTTCCCAACTGACCAAGTCCACTGCTGAGAAGATCTGGGGCCACATCTTACAAGCATTTGAGTCCATCCTTGGATCTTCTGTGACAATAGAAATTAGATGTGAGCCAAACAAAGATGCAGGATCGGGATCTCAACTGCCCCTTGTCTTGCTTGCTACTAAATATAGTTCATCTCAAATTAAAGACTTAAATGGAACTGGTGCTGAAGTTCATGCTTTGCAACCtgattttgttgaaaagaGAGGGGATGAAATTGTAGAAGAAGCAGAGTCTCCCAGGCAGTGCAATCCTAGTGAGCAGCAGGTTGATATGCATACAGCATCTAGTGCCCACAAGAAGCCAACTGTGGCGTCAAACACTGATATAAGAAATCTCAGGGGACAAAGTAAGAGTCAGAGTCTTGTGAGAAGTAAGGTATCCCTTGCTCATGTAATCCAGCAGGCTGAAGGATGTAGTCAGCGAAGTGGATGGTCGAAATGCAAAGCAGTTTCTATTGCTGAAAAGCTGGAACAAGAGAATCTGAGACTGGAGCCTAGGTCAAGAAGCTTACCATGCTGGAAAGCGTCAAGAATAACACGTCGTAAGGTTTCACGATGGAAAGCTCGGGCCCGAAAACCGCATGCATTGCTGAACTTTGTCTCATGTGGGAAATGTGTCTCTGGAAAATCTCCGAGGTA 3560 0.416 MTRAVRNRILKDANGDFSDHLRNHIHLTNCIHLKNHMHKNSPILANRSLMRDLVVLQRSRSLRDPSASPPSWHSPSIVDVLSKRVENDTMIQEGRRSVGGIERRKEGRRLSGTSLPLVILGTSKVAPGEVTRGNDGVAASSERSSRNGMGKGRKVGREESGRKSDKPDLLGVSEEQPLNYDGKELAQDVVSRHSESKDRKSKQMGKHVREVQVKTLSEQLNNAPLDSDDLASSNIHVHGRYPRHEKTINREASIHGHCSGPNKVKRRKFRSARRTRAATASRDTGGAENELSVASNSLAQGSVHSKYHVDEADGYVDENVTRAPKNGCGIPWNWSRIHHRGKTFLDIAGRSFSCGLSDSRLKKGTLAAKGRNTSDMPVVSDHSSSSTKSNAEALPLLVEASVSYGSSENACWGHDYSGELGIFSDNLFKNDVDSDLASEARSGDQHNLRGNHRRRHQSFTLKYMPRTFRDMVGQNLVAHALSNAVIRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLENPKPCGFCNSCIAHDMGKSRSIREVCPISNFDFESIMDLLDNMIVSQQTSQYKVFIFDDCDTLSADCWSAISKVIDRAPRRLVFILVSSSLDVLPHIIISRCQKFFFPKLKDTDIIYTLHWIATKEGLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELAGLISDEKLVDLLDLALSADTINTVKNLRVIMETGGEPLALMSQLATVITDILAGTYDFTKDTQRRKFFRRQPLSKRDMEKLRQALKTLCEAEKQLRISNDKLTWLTAALLQLAPDQQYMLPTSSDVSFNHSPLALNKVDLREAARKTSKHAEIPNKERRLSMDVRIENLHAGSSADGMTNGVSSERKRHTGASAAPQLASSHVSEMTRMNDRQQIFGKGRKGIEEIWLEVLERIEAPGLKEFLYQEGKLISVSFGAAPTVQLMFSSQLTKSTAEKIWGHILQAFESILGSSVTIEIRCEPNKDAGSGSQLPLVLLATKYSSSQIKDLNGTGAEVHALQPDFVEKRGDEIVEEAESPRQCNPSEQQVDMHTASSAHKKPTVASNTDIRNLRGQSKSQSLVRSKVSLAHVIQQAEGCSQRSGWSKCKAVSIAEKLEQENLRLEPRSRSLPCWKASRITRRKVSRWKARARKPHALLNFVSCGKCVSGKSPR 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00044 1182 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 191 1149 - -
Bva13g00044 1182 SMART AAA_5 490 631 IPR003593 -
Bva13g00044 1182 MobiDBLite consensus disorder prediction 254 290 - -
Bva13g00044 1182 MobiDBLite consensus disorder prediction 147 170 - -
Bva13g00044 1182 CDD AAA 472 631 - -
Bva13g00044 1182 Gene3D - 449 628 IPR027417 -
Bva13g00044 1182 MobiDBLite consensus disorder prediction 260 275 - -
Bva13g00044 1182 MobiDBLite consensus disorder prediction 1050 1076 - -
Bva13g00044 1182 MobiDBLite consensus disorder prediction 126 208 - -
Bva13g00044 1182 SUPERFAMILY post-AAA+ oligomerization domain-like 702 805 IPR008921 GO:0003677|GO:0006260
Bva13g00044 1182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 678 IPR027417 -
Bva13g00044 1182 MobiDBLite consensus disorder prediction 1046 1076 - -
Bva13g00044 1182 PANTHER PROTEIN STICHEL-LIKE 3 191 1149 - -
Bva13g00044 1182 Pfam DNA polymerase III, delta subunit 474 631 - -
Bva13g00044 1182 Gene3D - 632 694 - -
Bva13g00044 1182 MobiDBLite consensus disorder prediction 866 880 - -
Bva13g00044 1182 MobiDBLite consensus disorder prediction 864 899 - -
Bva13g00044 1182 CDD HLD_clamp_pol_III_gamma_tau 631 694 IPR045085 -
Bva13g00044 1182 MobiDBLite consensus disorder prediction 186 208 - -
Bva13g00044 1182 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 457 805 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00044 Bva-Chr13 196164 203230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00044 457 753 Core DNA Replication Machinery Family AT1G21690 23.154 3.61e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00044 - - gmx:100793832 1741.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00044 13 196164 203230 Bva13g00044 13 196164 203230 ECH