Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00028 ATGGCGGATTTTGCCTCCAAGAAGATCCAGACCGGCCCCGTTGGTTCCCGCAAGAAGGAGAACGGGAATCTTCTTCTGGGACGCTTCGAAATCGGAAAACTCCTCGGCCATGGAACCTTTGCCAAGGTCTATTTCGCCAGAAATATCAAAACCGGAGAAGGGGTAGCCATCAAAGTCATCgacaaagagaaaattctAAAAGGTGGCTTGGTTGCTCACATCAAGCGCGAGATCTCCATTCTCCGCCGCGTCCGCCACCCCAACATCGTCCAACTGTTCGAGGTAATGGCTACCAAGACAAAGATCTACTTTGTTATGGAATACGTTCGCGGCGGCGAGCTATTCAATAAGGTAGCCAAAGGGAGATTGAAAGAGGAGATGGCAAGGAAATATTTTCAGCAGTTGATTTCTGCAGTTGGGTTCTGTCACGCGAGAGGTGTTTACCATAGGGATCTCAAGCCCGAAAATCTGTTGCTCGACGAGAATGGTAATCTTAAAGTTTCTGATTTTGGTTTAAGTGCCGTTTCTGATCAAATTAGGCAAGATGGTTTGTTCCACACATTTTGCGGGACTCCTGCGTATGTTGCTCCCGAGGTTCTGGGGAGAAAAGGGTACGACGGAGTGAAGGTTGATCTTTGGTCTTGTGgggttgttttgtttgttttgatggCTGGTTATTTGCCTTTCCACGACCAGAATATTATGGCAATGTATAAGAAGATTTACAAAGGCCAATTCAGGTGTCCTAGGTGGTTTTCACCCGAGCTTTCTAAGCTTCTTATTCGTCTTCTGGAAGCCAACCCAGAAAATCGGATTACCATTCCGGAGATAATGGAGAATAAGTGGTTCAAGAAAGggtttaaacaaataaagttttaCGTCGAAGACGATAGGTTGTGCAACGTTGATGATAAGCTGAACATGGACGATGATGCGTCATCACTCTCGGATTACTCCTCCGTATCGGAATCTGATACCGAAATAGAGAGTAGAAAGAAGGGTGCTACATTGCCTAGACCAGCGAGTCTGAAtgcatttgatataatttcattttcgcCCGGTTTTGATCTTTCCGGGTTGTTCGAGGAGAAAGGCGACGAGACAAGGTACGTAACCGCCGCACCAGCGTCAAAGATTATATCCAAATTGGAGGAAATTGCGTATTTGTTTAGCTTTACGGTGAGGAAGAAGGATTGCAGAGTGAGCTTGGAGGGTTCGAGAGAAGGCGCGAAAGGGCCATTGACGATTGCGGCCGAGATATTTGAATTAACAGCATCTTTGGTTGTGGTGGAGGTAAAGAAGAAAGCAGGGGACAGAGCAGAATACGAGCAATTCTGTAACACCGAATTGAAACCCGTGCTGCAGAAATTGATGAGGGAAGAATCCGCAACTTGTTCACGGCTGACGAGTACTGAATCTTTGCCGCTGCCGTCGCGTAACGGATCGATGCTACGTTCAGATACCGAATGTTCATTCCTACCTTCGGATACTGAGTG 1496 0.4465 MADFASKKIQTGPVGSRKKENGNLLLGRFEIGKLLGHGTFAKVYFARNIKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEMARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLGRKGYDGVKVDLWSCGVVLFVLMAGYLPFHDQNIMAMYKKIYKGQFRCPRWFSPELSKLLIRLLEANPENRITIPEIMENKWFKKGFKQIKFYVEDDRLCNVDDKLNMDDDASSLSDYSSVSESDTEIESRKKGATLPRPASLNAFDIISFSPGFDLSGLFEEKGDETRYVTAAPASKIISKLEEIAYLFSFTVRKKDCRVSLEGSREGAKGPLTIAAEIFELTASLVVVEVKKKAGDRAEYEQFCNTELKPVLQKLMREESATCSRLTSTESLPLPSRNGSMLRSDTECSFLPSDTE 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00028 498 CDD STKc_SnRK3 28 282 - -
Bva13g00028 498 SUPERFAMILY Protein kinase-like (PK-like) 25 296 IPR011009 -
Bva13g00028 498 ProSiteProfiles Protein kinase domain profile. 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g00028 498 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Bva13g00028 498 Gene3D Kinase associated domain 1, KA1 338 459 - -
Bva13g00028 498 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 19 463 - -
Bva13g00028 498 Pfam Protein kinase domain 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g00028 498 MobiDBLite consensus disorder prediction 312 334 - -
Bva13g00028 498 MobiDBLite consensus disorder prediction 468 498 - -
Bva13g00028 498 PANTHER - 19 463 - -
Bva13g00028 498 CDD CIPK_C 344 455 - -
Bva13g00028 498 ProSiteProfiles NAF domain profile. 338 362 IPR018451 GO:0007165
Bva13g00028 498 SMART serkin_6 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g00028 498 Pfam NAF domain 340 396 IPR004041 GO:0007165
Bva13g00028 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Bva13g00028 498 Gene3D Transferase(Phosphotransferase) domain 1 19 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00028 Bva-Chr13 134610 136360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00028 24 498 CBL-interacting serine-threonine protein kinases AT4G18700 75.840 0.0 747
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Bva13g00028 Pkinase 5.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00028 - - gmx:100790133 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00028 13 134610 136360 Bva13g00028 13 134610 136360 ECH