Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00008 ATGATTATCAGGAACTGGGTCTTAAAGCGTAAGCGAAGAAAGCTTCCATCTGGACTGGATCATTCCAGTGGTAAAGATAATTCAGTAACCTCTGAGTCTTCACGGAACGCATCAGCTAAACGTCCACTAAATATTACTTTGAATGCGTGGTCTGTGATCTTGGTGGCAACTTATTGTGCTGTGATAGTTGTCCTCGCACTTATCATTTACAGTGTCTTAACCCCCCTCTTAAGTTATCTCCTGATGCGCATGCCTATGGGAAAGTGGCAATGTCCAAGCTGCACTCAAGGAAATGATCAACTAAAGCCAATAAACCACCtggattcaatttcaaaacGAGCCAGGACAAAGATTGTCACTGCAAAATCAAGAAGTGGAGTTAACTCACTTGATAGGGACAAGGTATCCCAGATTTTTAGTAGTAAACATATTTCTAAGAAAAGGTCCTCTGGAATAGGAAAATCTATATCAACATTGGGAGTGAAGCACCCAGAGAAGAAGCCATTGTCTTCCAAGTTGACACAGGTAACAAAAAGCTCAGTTTATGAATTCAATAAAGCAGGGGGTCATGTGTATGAAGTTCTTAGCCATGAAGATAATACTACGGCAGAATCTCTGCAGGTGACGATCTGGAATGGCTTTTGTTTTATGGTTGATCGAGTTCTTGGTTGTCGTGTTCAAGACTTGAATGTTGTGGAATATCATGGTTGTGCCAAAGCTAGAGCCATAATTCGCCAGTATGAATGGCATGCTAGTGATCcaaacaaattgaataagagaACTGCTGCCAATAAGTTTAATGTGCTTTTAACTACATATGAAATGGTTCTTGCTGATTCTTCTCATTTGCGTGGAGTTCCTTGGGAAGTCCTTGTGGTAGATGAGGGCCGTCGTCTGAAAAATTCTGGAAGTAAGCTTTTCAGCTTGCTAAACGCATTCTCCTTTCACCATCGTGTACTCTTGACTGGCACCCCTCTCCAGAACAACATTGGTGAGATGTTGAGGAGAAATTTAATGATCTTACAACCGCAGAGAAAGTTGAGGAATTG 1049 0.4032 MIIRNWVLKRKRRKLPSGLDHSSGKDNSVTSESSRNASAKRPLNITLNAWSVILVATYCAVIVVLALIIYSVLTPLLSYLLMRMPMGKWQCPSCTQGNDQLKPINHLDSISKRARTKIVTAKSRSGVNSLDRDKVSQIFSSKHISKKRSSGIGKSISTLGVKHPEKKPLSSKLTQVTKSSVYEFNKAGGHVYEVLSHEDNTTAESLQVTIWNGFCFMVDRVLGCRVQDLNVVEYHGCAKARAIIRQYEWHASDPNKLNKRTAANKFNVLLTTYEMVLADSSHLRGVPWEVLVVDEGRRLKNSGSKLFSLLNAFSFHHRVLLTGTPLQNNIGEMLRRNLMILQPQRKLRN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00008 349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 334 IPR027417 -
Bva13g00008 349 MobiDBLite consensus disorder prediction 21 35 - -
Bva13g00008 349 Pfam SNF2-related domain 227 333 IPR000330 GO:0005524|GO:0140658
Bva13g00008 349 Gene3D - 221 345 IPR038718 -
Bva13g00008 349 MobiDBLite consensus disorder prediction 16 35 - -
Bva13g00008 349 PANTHER PROTEIN CHROMATIN REMODELING 4 81 183 - -
Bva13g00008 349 PANTHER PROTEIN CHROMATIN REMODELING 4 228 334 - -
Bva13g00008 349 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 81 183 - -
Bva13g00008 349 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 228 334 - -
Bva13g00008 349 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 227 343 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00008 Bva-Chr13 55256 57434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00008 229 333 RAD5 or RAD16-like Gene Family AT1G11100 27.586 7.47e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva13g00008 SNF2_N 2.3e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00008 - - tcc:18607032 206.838