Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00007 ATGGTTCCTGTTGAGTTGTCATCAATCCAAGCTGAATATTACTGTGCAATgcttacaaaaaattatcagaTATTGCGGAATATTGGGAAAGGGGTTGCACAGCAATCTATGCTGAACATTGTGATGCAACTTAGAAAGGTCTGCAACCACCCATATCTGATACCTGGAACTGAGCCTGATTCTGGATCGGTTGAGTTTCTTCATGAAATGAGAATAAAGGCTTCTGCCAAGTTGACTCTTCTCCATTCTATGCTGAAAATATTACACAAAGAAGGACACGGAGTCcttattttttcacaaatgACGAAACTCCTTGACATTCTAGAGGACTATTTAAGCATAGAATTTGGGCCTAAAACTTACGAGAGAGTGGATGGCTCTGTTTCTGTGGCAGATCGTCAATCAGAGATTGCACGCTTTAACCAAGACAAAAGTcgatttgttttcttattatcTACTCACTCCTGTAGACTTGGGATAAATTTGGCAACCGATGACACTGTCATTATCTATGATTCAGATTTCATCCCGCATGATGATATCCAAGCAATGAACAGAGCACATAGAATTGGCCAATCAAATAGGCTTTTGGTGTACCGGCTTGTGGTTCGTGCCAGTGTTGAAGAGCGCATCTTGCAGCTAGCTAAGAAGAAACTAATGCTTGATCAGCTTTTTGTAAATAAGTCTGGATCTCAAAAGGAAGTAGAAGACATTTTAAAATGGGGAACTGAAGAACTCTTTAATGATTCTCCTTGTTTGAACGGGAAAGATACCaatgaaaataatagtaaaaaagaTGAGATGGGAATAGACATAGAACACAAGCATCGGAAGAGGATTGGTGGTCTGGGAGATGTATACAAGGATAGGTGTACAGATAGCAGCAGTAAGATTGTATGGGAAGAAAgtgcaattttaaaattgcttGACCGATCAAACCTTCAGAATGATTCTACTGATGTTGCTGAAGGGGATTCTGAGAATGATATGCTGGGCTCTGTGAAGTCCCTTGAATGGAATGACGACCCAACTGAAGAACATGGGATAGGTGAATCACCTTCTCACGGGACTGATGATATGTGTATGCAAAATCCAGAAGGGAAAGAAGATAATGTGGTGGCTGGCactgaagaaaatgaatgggACAGACTACTACGTGTGAGATGGGAGAAATATCAAAGTGAGGAGGAAGCAGCCCTTGGTCGTGGGAAACGACAGAGGAAAGCTGTTTCTTATAGGGAAGCTTATGCTCCACACCCAAGTGAAACAATGAGTGAGAGTGATGgtgaggaagaaagagaaccAGAACCAGAACCTAAGCGTGAATATACACCAGCTGGACGGGCTCTAAAGGCAAAATTGCCAACCACATTCTCATCGTTTCCAGAAAACCATAGGAAGGTGCTTGAAAACATAATGATGAGAACTGGGTCtgcatcaaataattttaaaaaggagTCAAAATCAGATGGTTGGTCTGAAGACGAACTTGACTCCCTTTGGATTGGTGTTCGTAGACATGGAAGGGGTAATTGGGATGCCATGCTTAGAAATCCCAGGTTAAAATTTTCCAAGTATAAAATCTCTAAAGATCTGTCAGTGAGATGGGAAGATGAACAACTCAAGATCTTTCGGGGGCCTCCATTTCCACTGCCAAAATCTACCAAGATGACAAAGTCTACCAAATCCACACTTTTTCCAATCTCTGATGGAATGATGGAACGGGCCCTGCATGGAAGCAAATTTACCTTGCCACCGAAATTCCAAACCCATTTGACCGACATGAAACTAGGAATCGGTGATCCTGCATTCAGCATGCCACATTTCAAAACACTAGATCGACCTAGTTTGCCAAATGATCATTTTATGTCTGTTCCATCTCTGGGTTATGATAAACACACAACAAATTTTCCTGAAGATGCTTTCATTGAACCATCTGATAGACAGGGGACTTCTTCCAGTGTACACACTGAGAGACCTTTTCTGCTTAATTCTTTGGGGACCAGCTGCTTGGGTTCTTTAGGTTTGGATTGCTCAGGCAGCATTGATAAGAAGCAGAAGGACGATGAGCAAGGCACTAGTAATTGTGGAAAATTGCCTAGACTTCCGGATGGGTCCCCTAATGATATCCGAGaaaatcacatcaatctaggaAATGAGGAGTCAACTAGCCCAGGATTGCCATCTGACCCTCTTAACCGACCAGATCATTTGCCCTCAAATGGTGAGGCAGTCGGTGGAAGTAGTACTTCAAAAGACAAGCTTCCCCATTGGTTACGGGAAGCTGTAAGTGCTCCTGCCAAACTCCCTTATCCCGAGCTGCCCCCGACTGTATCAGCAATTGCTCGTTCCATACGTATGCTGTATGGAGAAGATAAGTCTACAATTCCTCCATTTGTAATTCCTGGTCCACCTCCTTCCCTACCAAAAGACCCAAGGATCAGtttgaagaagagagagaagagaagagcaCACAAGTTCAGCCAGATCCTACCAGACGTTGCTGGAAGCAGCTACCATGTTGAGAATGATGCTTCAAGCACAACTCCCTTGGGCTCACCATTTCCTCTCCTTTCTCACACTGGAACACCTGGACTTGAGCAGATTGAATCTGACCTGAACTTGCCTCCGACTCAGTGTTCTAAACCCTTCGCATTCAACAGTGCACCAACAGAAAAAGATGAGTGCAGGATTGTCTCCTTCCCCTTTCTTGAGGGCAAGCTTCCATTGCCAAGGCCTGTGCCTGTGAACCGagctaaattcaaattcaaagattCCGAAGGTGCCTTCGAAACTAGGAGGCCAAGGCAAAGTTCATCTAAAGTGCGGGGACCACTTGAAGAACATCAAGTAAAACGTTCTCATAGCGGAGATTCCAGCAAGACTCAATCAGATGCTTCTCGCGTTGAACGGCCTGATGAAGAGGAGATATCTTCTGAGGGGACTGTCTCAGATCATGCAGTGAGAGATCAAGAAACATA 2981 0.4106 MVPVELSSIQAEYYCAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKILHKEGHGVLIFSQMTKLLDILEDYLSIEFGPKTYERVDGSVSVADRQSEIARFNQDKSRFVFLLSTHSCRLGINLATDDTVIIYDSDFIPHDDIQAMNRAHRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILKWGTEELFNDSPCLNGKDTNENNSKKDEMGIDIEHKHRKRIGGLGDVYKDRCTDSSSKIVWEESAILKLLDRSNLQNDSTDVAEGDSENDMLGSVKSLEWNDDPTEEHGIGESPSHGTDDMCMQNPEGKEDNVVAGTEENEWDRLLRVRWEKYQSEEEAALGRGKRQRKAVSYREAYAPHPSETMSESDGEEEREPEPEPKREYTPAGRALKAKLPTTFSSFPENHRKVLENIMMRTGSASNNFKKESKSDGWSEDELDSLWIGVRRHGRGNWDAMLRNPRLKFSKYKISKDLSVRWEDEQLKIFRGPPFPLPKSTKMTKSTKSTLFPISDGMMERALHGSKFTLPPKFQTHLTDMKLGIGDPAFSMPHFKTLDRPSLPNDHFMSVPSLGYDKHTTNFPEDAFIEPSDRQGTSSSVHTERPFLLNSLGTSCLGSLGLDCSGSIDKKQKDDEQGTSNCGKLPRLPDGSPNDIRENHINLGNEESTSPGLPSDPLNRPDHLPSNGEAVGGSSTSKDKLPHWLREAVSAPAKLPYPELPPTVSAIARSIRMLYGEDKSTIPPFVIPGPPPSLPKDPRISLKKREKRRAHKFSQILPDVAGSSYHVENDASSTTPLGSPFPLLSHTGTPGLEQIESDLNLPPTQCSKPFAFNSAPTEKDECRIVSFPFLEGKLPLPRPVPVNRAKFKFKDSEGAFETRRPRQSSSKVRGPLEEHQVKRSHSGDSSKTQSDASRVERPDEEEISSEGTVSDHAVRDQET 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00007 993 Gene3D - 463 565 - -
Bva13g00007 993 CDD SF2_C_SNF 75 202 - -
Bva13g00007 993 Pfam CHD subfamily II, DUF1087 377 414 IPR009463 -
Bva13g00007 993 MobiDBLite consensus disorder prediction 684 755 - -
Bva13g00007 993 MobiDBLite consensus disorder prediction 338 377 - -
Bva13g00007 993 MobiDBLite consensus disorder prediction 841 865 - -
Bva13g00007 993 Gene3D - 1 281 IPR027417 -
Bva13g00007 993 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 80 239 IPR001650 -
Bva13g00007 993 MobiDBLite consensus disorder prediction 927 993 - -
Bva13g00007 993 MobiDBLite consensus disorder prediction 339 353 - -
Bva13g00007 993 MobiDBLite consensus disorder prediction 841 856 - -
Bva13g00007 993 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 247 IPR027417 -
Bva13g00007 993 PANTHER PROTEIN CHROMATIN REMODELING 4 1 454 - -
Bva13g00007 993 PANTHER PROTEIN CHROMATIN REMODELING 4 455 987 - -
Bva13g00007 993 MobiDBLite consensus disorder prediction 396 412 - -
Bva13g00007 993 MobiDBLite consensus disorder prediction 396 449 - -
Bva13g00007 993 CDD SANT_TRF 492 536 - -
Bva13g00007 993 SMART helicmild6 106 191 IPR001650 -
Bva13g00007 993 MobiDBLite consensus disorder prediction 636 656 - -
Bva13g00007 993 SUPERFAMILY Homeodomain-like 491 538 IPR009057 -
Bva13g00007 993 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 454 - -
Bva13g00007 993 SMART DUF1087_2 359 420 IPR009463 -
Bva13g00007 993 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 455 987 - -
Bva13g00007 993 Pfam Helicase conserved C-terminal domain 80 191 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00007 Bva-Chr13 47828 55178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00007 92 221 RAD5 or RAD16-like Gene Family AT1G61140 37.692 1.55e-18 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00007 - - gmx:100793933 785.793