Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00005 ATGGCAGATGCGGGTACACCGTCGGTGGTTCCAGCCAACCGGCGGCGCGTCACTAGCGCGCCGGAGGATTTGGAGTTCGTGACCACGACGGGAATAGAGCCTATTTTGAGCTTTGAAAACATGGGCATCAAGGAAGATCTGCTCCGAGGCATCTATGCTTATGGATTCGAGAAGCCTTCTGCAATCCAGCAACGGGCCGTGAGACCCATAATTGAAGGTCGAGATGTTATTGCTCAGGCACAATCTGGTACTGGAAAGACTTCCATGATTGCCCTCACTGTTTGCCAGGTGGTGGATACCTCTATCAGAGAAGTCCAGGCCTTGATCTTGTCTCCGACAAGGGAATTGGCTGCACAGActgaaaaagttatattatctATTGGAGAGTACATGAATATACAAGCACATTCATGTATTGGAGGGAAGAGTGTGGGAGAAGATATACGGAAGCTTGAGTATGGAGTTCATGTGGTGTCTGGAACTCCTGGCCGAGTTTGTGATATGATCAAAAGGAGAACACTGCGCACTAGGGCTATCAAGTTGCTAGTTCTTGACGAATCTGATGAAATGTTGAGCAGAGGGTTTAAAGATCAAATATATGATGTGTATAGATATCTCCCTCCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATACTGGAGATTACAAATAAGTTCATGACAGATCCTATTAGAATCCTTGTAAAACGTGATGAGTTGACATTAGAGGGCATCAAGCAATTTTTCGTCGCAGTTGAAAAGGAAGAATGGAAGTTTGATACTTTATGTGATCTTTATGATACTCTCACCATCACTCAAGCTGTTATCTTCTGTAACACTAAGCGAAAGGTGGACTGGTTGACTGAAAAAATGCGTAACTATAATTTCACTGTCTCATCAATGCATGGTGACATGCctcagaaagaaagagatgcaATTATGGGAGAGTTTCGATCTGGTGAAACCCGTGTACTAATTACAACAGATGTTTGGGCTCGTGGCCTTGATGTACAGCAGGTTTCTTTAGTCATCAATTATGACCTTCCAAATAATCGAGAACTTTATATTCATCGAATTGGGCGGTCTGGACGTTTTGGACGCAAGGGTGTTGCAATAAACTTTGTCAAGAGCGACGATATCCGGATCCTAAGAGACATTGAACAGTATTACAGTACTCAGATTGATGAAATGCCAATGAATGTTGCCGATCTTATATA 1229 0.4231 MADAGTPSVVPANRRRVTSAPEDLEFVTTTGIEPILSFENMGIKEDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQVVDTSIREVQALILSPTRELAAQTEKVILSIGEYMNIQAHSCIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITNKFMTDPIRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNYNFTVSSMHGDMPQKERDAIMGEFRSGETRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNVADLI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00005 409 Gene3D - 245 409 IPR027417 -
Bva13g00005 409 PANTHER BNAC03G41130D PROTEIN 23 402 - -
Bva13g00005 409 CDD DEADc_EIF4AIII_DDX48 38 238 - -
Bva13g00005 409 SMART helicmild6 289 370 IPR001650 -
Bva13g00005 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 392 IPR027417 -
Bva13g00005 409 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 67 237 IPR014001 -
Bva13g00005 409 Pfam DEAD/DEAH box helicase 61 223 IPR011545 GO:0003676|GO:0005524
Bva13g00005 409 Gene3D - 27 244 IPR027417 -
Bva13g00005 409 CDD SF2_C_DEAD 249 379 - -
Bva13g00005 409 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 248 409 IPR001650 -
Bva13g00005 409 Pfam Helicase conserved C-terminal domain 262 370 IPR001650 -
Bva13g00005 409 SMART ultradead3 55 252 IPR014001 -
Bva13g00005 409 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 23 402 - -
Bva13g00005 409 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 36 64 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00005 Bva-Chr13 42312 45781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00005 22 409 Eukaryotic Initiation Factors Gene Family AT3G19760 88.402 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00005 K13025 - csv:101222664 745.732