Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03333 ATGAATTTCGCCAAGTACTTCCTGTCCTTCATGTTGCACCTCGTTGTGGTTCAGGGTTCTGGTCCTTGTCCAGGAGTGCGATTGGATATTCAAGAGAAACATGTTGTAATGGATAATGGCATAGTCCAAGTGACTTTATCAAACCCGGACGGAATTGTGACTGCAATCCAGTATAATGGGATCGACAATTTGCTCGAAATCGTTAATCAGGAATATGACAGAGGATACTGGGATCTTGTATGGGACGAAGCTGAGAAAAGCGGGACAAAGGGTAGATTCGATAGGATGGAAGCCACAAACTTTACAGTAATAGTGGAAAATGACGAACAAGTCGAGCTTTCATTTACCAGAATCTGGGTTCCTTCCCTGGAGGGAAAGCTTGCCCCCCTCAATATAGATAAAAGGTTTACAATGCTTAAATGTTCCTCTGGCTTCTACACGTATGCTATCTTTGAGCATTTGAAGGAATGGCCAGCCTTCAATCTTGACAACACGAGAATCGCTTTCAAGCTTAGGAAAGACAAGTTCCATTATATGGTGATAGCAGACGACAGACAAAGATTTATGCCTCTGCCCGATGACCGGTCATCGGAAAGGGGACAAACACTAGCCTACCCAGAGGCTGTCCTGCTTGTCAATCCTGTGGAGCCCGAGTTCAAAGGAGAgGTAGACGACAAGTACCTGTACTCATCCGAGAGCCGATACAATAGGGTTCACGGCTGGATAAGCATCGACCAATTAGTGGGCTTCTGGTTAATTACACCCAGCTACGAGTTCCGATCCGCCGGACCCCTCAAGCAATACCTTACCTCCCACGTGGGCCCCACCACCCTCTCTGTATTTCATAGCACGCATTACTCGGGGGAAGATTTGGTAATgaaatttgggaccaatgaGCCATGGAAGAAAGTCTTTGGACCCATATTTATATACCttaattctttattaaatCGGGAAAACCCGCTTAAGCTCTGGGCGGACGCCAAACAACAGATGGTCAATGAAATTGAAAGCTGGCCATATGCTTTTCCAGCTTCGGAAGACTTCCCCTCATCTGATCAAAGGGGCACAGTTAAAGGTAGATTACTTGTCAGAGATAGGTATATCAGTGATGCATTCATCTCAGTAAATGGTGCTTTTGTGGGATTAGCACCCCCAGGAGATGTTGGATCTTGGCAAAGAGAATCCAAGGGTTATCAGTTTTGGACCACTACAGATGAAAAAGGTTATTTCTCAATCATTGACATACGTTCTGGGGACTATAACCTGTACTCCTGGGTCACTGGATATATTGGCGATTACCGATATGACAATGTCATTAACATAACATCAGGTTGTGAAATTGATGTGGGAGAACTTGTTTATGAGCCTCCCAGGGATGGCCATACATTGTGGGAAATAGGCATCCCTGATCGTTCTGCAGCTGAATTCTACATTCCAGCTCCAAATCCAAAGTACATTAACAGACTCTATATCAATCATCCAGACAGGTTTAGGCAATACGGATTATGGGAGAGATATGTAGATTTGTATCCAAATGAAGACTTGGTTTACACTGTAGGCATCAGTGACTATAGGAAAGACTGGTTTTTTGCTCAAGTTAACAGGAAAAAAGACAATAACACATACCAAGGAACCACatggaaaatcaattttaaacttGATGATGTGAATATAAATGGAACCTACAAATTACGATTGGCCCTGGCATCGGTGCATTCTTCTCTGCTGCAAGTTCGGATAAACAATTCAGAGGCAAACCCACCATTATTTTCAAGTGGAATCATTGGGAAGGAAAACACCATTGCTAGACATGGAATTCATGGGCTCTACTGGCTATACAGCATTGATATACAAGGCACTCTTCTTGTGCAGGGGAACAATTCCATCTTTCTAACACAAGCAAGAAGTACAAGCCCCTTTCAAGGGATCATGTATGATTATATTCGATTAGAAGGCCCCTCTTCTATATCTTGTACAGATCAGAATTG 1991 0.4259 MNFAKYFLSFMLHLVVVQGSGPCPGVRLDIQEKHVVMDNGIVQVTLSNPDGIVTAIQYNGIDNLLEIVNQEYDRGYWDLVWDEAEKSGTKGRFDRMEATNFTVIVENDEQVELSFTRIWVPSLEGKLAPLNIDKRFTMLKCSSGFYTYAIFEHLKEWPAFNLDNTRIAFKLRKDKFHYMVIADDRQRFMPLPDDRSSERGQTLAYPEAVLLVNPVEPEFKGEVDDKYLYSSESRYNRVHGWISIDQLVGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGEDLVMKFGTNEPWKKVFGPIFIYLNSLLNRENPLKLWADAKQQMVNEIESWPYAFPASEDFPSSDQRGTVKGRLLVRDRYISDAFISVNGAFVGLAPPGDVGSWQRESKGYQFWTTTDEKGYFSIIDIRSGDYNLYSWVTGYIGDYRYDNVINITSGCEIDVGELVYEPPRDGHTLWEIGIPDRSAAEFYIPAPNPKYINRLYINHPDRFRQYGLWERYVDLYPNEDLVYTVGISDYRKDWFFAQVNRKKDNNTYQGTTWKINFKLDDVNINGTYKLRLALASVHSSLLQVRINNSEANPPLFSSGIIGKENTIARHGIHGLYWLYSIDIQGTLLVQGNNSIFLTQARSTSPFQGIMYDYIRLEGPSSISCTDQN 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03333 663 Gene3D - 28 307 IPR014718 GO:0030246
Bva12g03333 663 SUPERFAMILY Starch-binding domain-like 352 449 IPR013784 GO:0030246
Bva12g03333 663 SUPERFAMILY Galactose-binding domain-like 460 652 IPR008979 -
Bva12g03333 663 Pfam Rhamnogalacturonate lyase family 27 223 IPR010325 -
Bva12g03333 663 Pfam Polysaccharide lyase family 4, domain III 463 651 IPR029411 -
Bva12g03333 663 Gene3D - 460 652 - -
Bva12g03333 663 CDD RGL4_C 465 652 - -
Bva12g03333 663 Gene3D - 351 448 - -
Bva12g03333 663 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 1 653 - -
Bva12g03333 663 Pfam Polysaccharide lyase family 4, domain II 377 449 IPR029413 -
Bva12g03333 663 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 653 - -
Bva12g03333 663 CDD RGL4_N 34 314 - -
Bva12g03333 663 CDD RGL4_M 354 453 IPR029413 -
Bva12g03333 663 SUPERFAMILY Galactose mutarotase-like 38 314 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03333 Bva-Chr12 24116762 24121120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03333 26 655 Polysaccharide Lyase AT1G09890 67.350 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03333 K18195 - gmx:100786488 1097.8