Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03332 ATGTCGCCATTAGGGGTGCAACTGCTTGCTCAGGGTCGTCAtGTGGTAATGGACAATGGCATATTGAAAGTCACGTTATCAAATCCTGAGGGTATTGTCACAGGAATAGAATACAATGGCATCAACAATTTGCTTGAAGTTTCCAACGATGAGTCTAATCGAGGGTACTGGGACCTTGTTTGGAGCTCGCCAACGAGTACCGGAACCGCTGGTGCATTTGATGTGATAAAGGGAACTACTTTCAGTGTTATAGTGGAAAATGAGGAACAAGTTGAGCTATCCTTCAAAAGAACGTGGGATGCCACCCTTGAGGGCAAGCAGGTTCCCTTAAACATTGATAAAAGGTTTATTATGTGTCGTGGTTTGTCTGGCTTCTACTCTTATGCTATTTATGAGCACTTGGGGGAATGGCCTGCTTTCAATCTTGACGAAACCAGAATTACTTTCAAGCTCAGAAAAGACAAGTTTCATTATATGGCAATGGCAGACAATAGACAAAGAAACATGCCTCTCCCAGATGACCGATCGCCTCCAAGAGGCCAACCCCTTGCCTACCCAGAAGCAGTTCTACTCGTCAATCCAATTGAAACAGAATTTAAAGGAGagGTGGACGATAAGTACCAATATTCGTGTGACAATAAGGATAGTAGTGTCCACGGGTGGATCTGTATGGACCCAGGCGTGGGATTCTGGCTCATAACGCCCAGCAACGAATTCCGATCTGGTGGACCCGTCAAACAGAACTTAACCTCTCATGTGGGGCCCACCACACTTGCTGTTTTTCTGAGTGCTCACTACAGTGGAGAGGATTTGGTGCCGAAATTCAAAGCCGGGGAGCCATGGAAGAAAGTTTTTGGTCCAGTTTTCATCTACCTCAATTCTGCATTTTATGGAGACAACCCACTTACACTCTGGAATGACGCTAAACTTCAGATGCTGATAGAAGTTCAGAGCTGGCCATACAGTTTTCCTGCATCAGCAGATTTCCCTAAATGGGAAGAACGTGGTTATGTTAGTGGTCGCCTACTGGTCCGAGACAGGTATATTAGTGATGACTATATACCAGCAAAAGGTGCTTATGTTGGCTTTGCTCCACCAGGAGACGTTGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTCTGGAGCAGAGCTGATGATGATGGCTATTTCTCCGTCGCCAATATACATGCCGGtgactataatatatatgcatgggTACCTGGTTTTATAGGCGATTATCGATATGATGTTGTTATAACCATAACTGAAGGTTCTTACATCGACGTGGGTGAGCTTGTATATGAACCTCCAAGAGATGGCCCAACATTATGGGAAATAGGTATCCCCGATCGCTCAGCTGCTGAGTTCTATGTTCCTGATCCAAATCCCAGATATATCAACAAACTCTATGTTGATCATCCTGACAAGTTTAGGCAGTATGGACAATGGGAAAGATATGCAGAATTATACCCTGACAAAGATTTAGTTTACACTGTTGGTGCAAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACAAGGAAGAAAGACGATAAAACATATCAAGGAACCACATGGCAAATCAAGTTCACGCTTGACAAGGTAGACAAAAAAGGTACCTATATATTACGGGTAGCTTTGGCATCAGCAACAGCTTCAGAATTGcaggtaCGAGTCAATAATCCAAATGCAAATCGTCCTCTATTTTCAAGTGGGTTGATAGGAAAGGATAACTCAATTGCCAGGCATGGAATCCATGGGCTGTATTGGCTTTACAGTGTGAATATACCGAATACTCTACTTGTTGAAGGAGATAATACAATCTTTCTGACACAGTCAAGAGGGAACAGTCCATTTCAGGGGATCATGTATGATTATATTCGTTTGGAATGTCCCCCAAATGTCTa 1913 0.4276 MSPLGVQLLAQGRHVVMDNGILKVTLSNPEGIVTGIEYNGINNLLEVSNDESNRGYWDLVWSSPTSTGTAGAFDVIKGTTFSVIVENEEQVELSFKRTWDATLEGKQVPLNIDKRFIMCRGLSGFYSYAIYEHLGEWPAFNLDETRITFKLRKDKFHYMAMADNRQRNMPLPDDRSPPRGQPLAYPEAVLLVNPIETEFKGEVDDKYQYSCDNKDSSVHGWICMDPGVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEPWKKVFGPVFIYLNSAFYGDNPLTLWNDAKLQMLIEVQSWPYSFPASADFPKWEERGYVSGRLLVRDRYISDDYIPAKGAYVGFAPPGDVGSWQRECKNYQFWSRADDDGYFSVANIHAGDYNIYAWVPGFIGDYRYDVVITITEGSYIDVGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPRYINKLYVDHPDKFRQYGQWERYAELYPDKDLVYTVGASDYTKDWFFAQVTRKKDDKTYQGTTWQIKFTLDKVDKKGTYILRVALASATASELQVRVNNPNANRPLFSSGLIGKDNSIARHGIHGLYWLYSVNIPNTLLVEGDNTIFLTQSRGNSPFQGIMYDYIRLECPPNV 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03332 637 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 636 - -
Bva12g03332 637 SUPERFAMILY Starch-binding domain-like 354 430 IPR013784 GO:0030246
Bva12g03332 637 Pfam Polysaccharide lyase family 4, domain II 357 429 IPR029413 -
Bva12g03332 637 Gene3D - 441 632 - -
Bva12g03332 637 Pfam Polysaccharide lyase family 4, domain III 443 631 IPR029411 -
Bva12g03332 637 CDD RGL4_N 10 304 - -
Bva12g03332 637 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 636 - -
Bva12g03332 637 Gene3D - 6 305 IPR014718 GO:0030246
Bva12g03332 637 CDD RGL4_C 445 632 - -
Bva12g03332 637 Pfam Rhamnogalacturonate lyase family 13 203 IPR010325 -
Bva12g03332 637 SUPERFAMILY Galactose-binding domain-like 440 632 IPR008979 -
Bva12g03332 637 Gene3D - 333 430 - -
Bva12g03332 637 CDD RGL4_M 334 433 IPR029413 -
Bva12g03332 637 SUPERFAMILY Galactose mutarotase-like 13 298 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03332 Bva-Chr12 24107802 24112164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03332 1 634 Polysaccharide Lyase AT1G09890 72.170 0.0 955
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03332 K18195 - gmx:100814721 1150.19