Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03330 ATGGGGAGAGGGAAGATCGTGATAAGGAGGATCGACAATTCAACGAGCAGGCAAGTGACGTTCTCGAAGAGAAGGAATGGTTTGCTGAAGAAGGCGAAGGAGCTTGCAATCCTTTGTGACGCTGAGGTCGGACTTATGATCTTCTCAAGCACTGGCAAGCTCTATGATTTCGCCAGCACCAGCATGAAATCAGCAATTGAACgattcaacaaaacaaaagaggaACATCATCAACTTGGGAGTTCAACATCTGAAATAAAGTTTTGGCAAAGGGAGGCAGCAATGTTACGGCAGCAATTACAAAACTTGCAAGAAAGCCATCGGCAAATGATGGGAGAAGAACTTTCGGGTTTGGGTATCAAAGAATTACAAAGTTTGGAGAACCAATTGGAAATTAGCCTCCGGGGTGTCCGAATGAAAAAGGACCAAATTCTAATGGATGAAATAGAGGAATTAAGCCAAAAGGGAGACCTCATACACCAAGAAAATGTGGAACTGTATAAGAAGGTAAACCTAATTCGTCAAGAAAACAcggaattaaaaaagaagGTCTATGGAACAAGTGATGGGAATGGAACAAACAGAAACTCTGTGCTCACAAATGGTCTAGGCATAGGGGAAGATTTGCAGGTACCTGTGAATCTCCAGCTTAGCCAGCCACATCAACACAGCTATGAGACACCTTCAGGGGCCACAAAATTGGGATTGTA 710 0.4155 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGLMIFSSTGKLYDFASTSMKSAIERFNKTKEEHHQLGSSTSEIKFWQREAAMLRQQLQNLQESHRQMMGEELSGLGIKELQSLENQLEISLRGVRMKKDQILMDEIEELSQKGDLIHQENVELYKKVYGTSDGNGTNRNSVLTNGLGIGEDLQVPVNLQLSQPHQHSYETPSGATKLGL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03330 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva12g03330 222 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Bva12g03330 222 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bva12g03330 222 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva12g03330 222 Coils Coil 86 113 - -
Bva12g03330 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 219 - -
Bva12g03330 222 Gene3D - 13 113 IPR036879 GO:0003677|GO:0046983
Bva12g03330 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva12g03330 222 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva12g03330 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva12g03330 222 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 219 - -
Bva12g03330 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bva12g03330 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva12g03330 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva12g03330 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03330 Bva-Chr12 24087412 24096438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03330 1 219 MADS-box Gene Family AT4G37940 62.557 6.94e-95 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva12g03330 K-box 2.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03330 K09264 - tcc:18591843 365.925