Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03307 atgttttcttactCAAATCCAGCTACACAACTTGCAAACAGCAAACAAGTGCAAGCAGTGATAGGAACACAACTGAATGAATCAGAATTGGTGGCCAAGATttataaaacatcaaaaaaattaccaatcaTTTCCTTAACCTCAATGGCAACCCCTGAATCAAACCCAGTTCCATTGCCATACTTCATCCAAATGGCTAATGATGTTACTATTCACATGCAATGCCTTGCAGACATTGTAGGACAGTTCAGGTGGCGTAAAGTGACAGCAATCTACGAACAAAACGACGGTTTTACCTCTAATTCCAGTATATTGACTTACCTGTCCAATAATCTCTGGGATGTTAATTCTGAGATTGATGAACATGTTGCATTCCCTTCGTTAGCTTCTCTTTCAGACCCCAAAGCCACCATAGAACAAAAGCTCAAGAGCCTGCAGAAGAAGAGCAATAGGGTTTTTCTGATAGTACAATCATCCTTGGAATTTGCTGTTATGCTTTTTGAGAAGGCAAACCAAATGGGAATGATTGAAAAAGGCTCAGCATGGATCATCTCGGACAGCGTAGCCAGTCATCTTGATTCTTTGGATCCCTCGGTTACCGATAACATGCAGGGTATTCTTGGATGCAAAACAAATTTCAGTGCCACCAGCTCAAAATTCAGAAACTTTAAGTTCAAATTCCGGGGAAAGTTCCTATCAGAATTCcccaaagaagaaaaccagGAGCCAAGTTTGTTTGCACTTCGAGCTTATGACACAATTTGGGCCATTTTTCTTGCCTTGAAGAAATCACAAGGAAACTTTTCCCTGGAAGCATTTTCCAAAAGCATATTATCAAGTAATTTTGATGGCCTTAGTGGCAAGATAAGTTTCAAAAATGGAAGATTAAACCAAGCACCTATCTTTAAGATAGTCAATGTTTTTGGAAGAAGCTACAAAGAATTGGCATTCTGGTCAAATATATCTGGCTTCTCAAAGTATCCAGTTACGCATCAAGCAATGGAAGGAAGAAGTCAAAATAATTCTTCTGGAGTTCTAGGCACAGTCAACTGGCCTGGTGGCTCACAAACAGTTCCAAAGGGCTGGGTTTATAGATATGAAGGTAAACCTTTAAAAATAGGGGTTCCACTTAATGGAGCCTGTCCTCATCTGATGCATGTAAGCTACGATCAGAACAAAACCAAGGTCACAGGTTTCTCTGCTGATGTCTTTAGAAAAAGCTCGAAGCACCTGCCTTATGATTTGAGTTATGATTTTGTTCCCTTCAATGGCACATACAATGAAATGGTAAAGCACGTCAACAACAAGGACCTTAATGCTGCAATCGGAGATATAGAAATAATGTCAAATCGATATCAATATGTGCAATTTGCCCATCCGTATGTGGATTCTGGCGTTACAACCATAGTCAGAGTAAAACCAGATAGATCCAAGCAAACATGGATGTTCATGGATgcttttacaaaagaaatgtgGCTGTTATTGGCAACAATGCACCTATATGTTGGACTTGTTATCTGGATCATTGAACGTGGTGATAATTCAGAGTTAAAGGGATTTGGGGCAATGCTCTGGTTCTCTGTCACcatgttattttttacacaaaGGGAACCCGTGAGAAGAAACTTGGCTCGATTTGTTCTTGCACCTTGGTTGGTTGTCATTTTGATCGTAACAACAAGTTTTACAGCAAGCCTGACATCTATGATGACAGTCTCCCATCTCGAACCATCTGTGCCCGACCTGCAGACACTTAAGAGGACAAATGCAATTGTAGGCTGCAATAGGAGGTCCTTCATGTGTGATTATTTGACTAATAAACAGGGATTTAAGCCTGAGAACATCAAGAGATTTGACTCCCTTGATGAATACCCAAGGTCATTAGAGAACAATGAAATCAAAGCAGCTATTTTAATTGCACCACAGGCTGAAATCTTCCTTGCTACCTATTGTAAGGGCTACATCACAGCAGGAACCCCATTGACGCTTGGTGGTCTGGGCTTTGTTTTCCCAAGAGGTTCAAGATTGGCAGTAGACATGTCAGAAGCTGTACTGGAATCAATAGAAAGAGGAGAAGTGCAggatttgaagaagaaaatgctaTCCACCACAAATTGCAGGTCATCTGATGATGCGGAACAAGATGAAAAACTAGGTCCCCAACCTTTCTTTGGCCTATTCTACATTTCTGGCACCATAGCAAGCTTGGGTTTAGTATTCACTATGGTGCATTTTGCTGGAAGAAATGTAAAAACATCCAAGACATGGCAACGAATCAGAAGCATGAAACGTTCACTTATCCCTGAAAGAAATAGACAAGGCGAGACATTTACTAATGAGTTGTTAGGAATATGCTTCAGGACTGAAACATGTCCACGTGctgcatatatttttta 2396 0.3877 MFSYSNPATQLANSKQVQAVIGTQLNESELVAKIYKTSKKLPIISLTSMATPESNPVPLPYFIQMANDVTIHMQCLADIVGQFRWRKVTAIYEQNDGFTSNSSILTYLSNNLWDVNSEIDEHVAFPSLASLSDPKATIEQKLKSLQKKSNRVFLIVQSSLEFAVMLFEKANQMGMIEKGSAWIISDSVASHLDSLDPSVTDNMQGILGCKTNFSATSSKFRNFKFKFRGKFLSEFPKEENQEPSLFALRAYDTIWAIFLALKKSQGNFSLEAFSKSILSSNFDGLSGKISFKNGRLNQAPIFKIVNVFGRSYKELAFWSNISGFSKYPVTHQAMEGRSQNNSSGVLGTVNWPGGSQTVPKGWVYRYEGKPLKIGVPLNGACPHLMHVSYDQNKTKVTGFSADVFRKSSKHLPYDLSYDFVPFNGTYNEMVKHVNNKDLNAAIGDIEIMSNRYQYVQFAHPYVDSGVTTIVRVKPDRSKQTWMFMDAFTKEMWLLLATMHLYVGLVIWIIERGDNSELKGFGAMLWFSVTMLFFTQREPVRRNLARFVLAPWLVVILIVTTSFTASLTSMMTVSHLEPSVPDLQTLKRTNAIVGCNRRSFMCDYLTNKQGFKPENIKRFDSLDEYPRSLENNEIKAAILIAPQAEIFLATYCKGYITAGTPLTLGGLGFVFPRGSRLAVDMSEAVLESIERGEVQDLKKKMLSTTNCRSSDDAEQDEKLGPQPFFGLFYISGTIASLGLVFTMVHFAGRNVKTSKTWQRIRSMKRSLIPERNRQGETFTNELLGICFRTETCPRAAYIF 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03307 798 CDD GluR_Plant 369 701 - -
Bva12g03307 798 Gene3D - 69 243 - -
Bva12g03307 798 SUPERFAMILY Periplasmic binding protein-like I 8 362 IPR028082 -
Bva12g03307 798 SMART GluR_14 372 703 IPR001320 GO:0015276|GO:0016020
Bva12g03307 798 Gene3D - 481 615 - -
Bva12g03307 798 Pfam Receptor family ligand binding region 8 306 IPR001828 -
Bva12g03307 798 Pfam Bacterial extracellular solute-binding proteins, family 3 388 700 IPR001638 -
Bva12g03307 798 PANTHER GLUTAMATE RECEPTOR 8 771 - -
Bva12g03307 798 Gene3D - 250 371 - -
Bva12g03307 798 SUPERFAMILY Periplasmic binding protein-like II 346 699 - -
Bva12g03307 798 PIRSF IGluLR_plant 2 783 IPR017103 -
Bva12g03307 798 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 8 771 - -
Bva12g03307 798 Gene3D - 372 480 - -
Bva12g03307 798 Pfam Ligand-gated ion channel 701 731 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03307 Bva-Chr12 23897943 23901265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03307 16 745 Ion Channels AT2G17260 30.739 5.08e-112 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03307 - - vra:106763764 903.279