Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03294 ATGGAAAATGCAGGTCCTAAGGTTCAAAATGATGGGGATTTCGTGCCAGTTCCTGTTCATAATCTGGAGACAAGTTCTGGAGATGGAAAAGGTCAAGAGGCATCCTCGAAACGGCAGTCCAGACGGCCAAGCCTCCCCTCTTTGCAAATACCAGCAATGTCACTGGAAAGTACATCATCTTCTTTGGCAAGTGCAGATTCTTCTTCGTTGTCAAGTCTGGGTTCCTCTAGAGGGGGACTGCCCCTAAAGCCAAATTCTGCTAAAGGCAAGCCTTCTAGAAGAAGTTTACTTCCTCAGTGGAGCTCCAAGAAAAAATACGATTCCCAAGACTGTCAAAGGACAGTCCTTATTGTTCCTGACACTCCCCCATCACATCATCCTGTGGGTAGGCCTTCAACTTCAAGGATCCTTTCTCTTAATAAGGTTCCTTTCCCTTCATCAACGAAAGCAACGCAATCATTACCGGCTACACCAACCGCAAATTCAGTTGTAGAGACTGTAAATGGAAGACGCCTATGCAGTGTTTTGGATTCAAGTAAAAAGGATGTTAAGCAGCTTATCACTCGATCATTTTCAGTTCCAGTTAATATCAGAACCACTAGTTTAAGGTGTACAACTTCTAGTAGTTTGATCCGTGTGATTTCAGCAAGATCACTTACTTCAGCAGTTGAAAGTAATTCAAGTTATGTTGCTCCAGTGCACGAGatggTCAATAAAGATGCTGCTGAGGATATCCCAGAGGAAGAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGGGGTGATACACTTAAGATGGAGTGCAGTTGTAAGGGCGAGCTTGCACTTGCTCACAAACAGTGTGCAGTGAAGTGGTTTAGTATCAAGGGAAACAAGATCTGTGATGTCTGCAAGCATGATGTCCGGAACCTCCCTgtaaaattgttgaaaatcCGCAATCCTCCCAGACGGTCATCAAATACAGCAGAACATAGAGAAGTCAGGATCTGGCAGGTTGTACCCGTACTTATCTTGATCAGCATGCTGGCTTATTTCTGCTTTTTGGAGCAGCTTCTgGTTCCAAGTTTGGGTGTTAAAGCTCTATCCATTTCATTACCTTTCTCCTGCGTTTTAGGTGTCCTTTCATCTATGTTTGCTTCAACCATGGTGAACAGGAGTTTCATATGGGCTTATGCTTGTTTCCAGTTTGTGATTATCGTCATCTTTTCTCACGTGTTTTATACAATACTTCATGTAAATCCCATTCTATCGGTTCTTCTTTCCTCGTTCACTGGATTTGGGATTGCAATCAGCACAAATACTCttattattgaatttcttaGATGGAGGGCTAGTAGgcatattcaaattttcaatcgCGAGATTTGGCAAATCAGCAGATA 1388 0.4186 MENAGPKVQNDGDFVPVPVHNLETSSGDGKGQEASSKRQSRRPSLPSLQIPAMSLESTSSSLASADSSSLSSLGSSRGGLPLKPNSAKGKPSRRSLLPQWSSKKKYDSQDCQRTVLIVPDTPPSHHPVGRPSTSRILSLNKVPFPSSTKATQSLPATPTANSVVETVNGRRLCSVLDSSKKDVKQLITRSFSVPVNIRTTSLRCTTSSSLIRVISARSLTSAVESNSSYVAPVHEMVNKDAAEDIPEEEAVCRICLVELGEGGDTLKMECSCKGELALAHKQCAVKWFSIKGNKICDVCKHDVRNLPVKLLKIRNPPRRSSNTAEHREVRIWQVVPVLILISMLAYFCFLEQLLVPSLGVKALSISLPFSCVLGVLSSMFASTMVNRSFIWAYACFQFVIIVIFSHVFYTILHVNPILSVLLSSFTGFGIAISTNTLIIEFLRWRASRHIQIFNREIWQISR 462
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03294 462 Pfam RING-variant domain 252 299 IPR011016 GO:0008270
Bva12g03294 462 PANTHER OS02G0165000 PROTEIN 29 454 - -
Bva12g03294 462 CDD RING_CH-C4HC3_MARCH 252 300 - -
Bva12g03294 462 SUPERFAMILY RING/U-box 248 303 - -
Bva12g03294 462 SMART ringv_2 251 300 IPR011016 GO:0008270
Bva12g03294 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 308 IPR013083 -
Bva12g03294 462 PANTHER OS02G0165000 PROTEIN 29 454 - -
Bva12g03294 462 MobiDBLite consensus disorder prediction 1 107 - -
Bva12g03294 462 MobiDBLite consensus disorder prediction 25 79 - -
Bva12g03294 462 ProSiteProfiles Zinc finger RING-CH-type profile. 244 306 IPR011016 GO:0008270
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bva12g03294 Bva-Chr12 23745321 23751829 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03294 237 330 C3H Transcription Factor Family AT2G37950 39.175 3.39e-14 69.7
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00513 12 7251065 7256680 Bva12g03294 12 23745321 23751829 BWGD