Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03276 ATGGAAATGCAACAGCTTTTAAGCATGGGTTTCCCTGACGAGTTAGCCGCCCAAGCCTTGGCGGCTACTGGCGGCAAATCCACCGTGAAAGCCACTGAATGGATTCTAACCCAAACCCAGAAATCCTCTCCCAATTCTGGTTCTGACCAATCTTCAGACCCAACCCAGAATCCTAACCCATCTCCATTTCAACCCAAGCTTGACCgtttcttcaatttcaaatcaaaggGTCAGTCTCATAATGCTTCCTTTCCCACTATTACAGCCATAGCAGgcccagaagaagaagaagaaggaactGAGGAATTGACCCCACCCAAGCGCGTTAAACAGAGTTCTGGGTTCTTTTTGAATCGTTTTCATCAGAAAACTgtagagaaggagaagaaacagCACCACGAGCCGTTATATGAGCGTATGCGGCCCCGGACCTTAAACGACGTCGTGGGTCAGGACCATCTCTTGGCAAATAGTTCTCTGCTTCGTTCGGCGATTGAAAGGAATCGTCTTCCTTCGATTGTGTTTTGGGGTCCTCCTGGTACTGGTAAGACTTCTATTGCCAAAGCCATTGTTAATTCGGCGAGTTTACAGAAACAACGACAGCAACAATGCCCTTATTATAGGTTTGTTTCATTATCTGCTGTAACTAGTGGGGTTAAAGATGTGAGGGATGCAGTTGAGGAAGCTAGGAAGTTGAAAGTGAAAAGTAACCTAAGAACTGTGCTGTTTGTGGACGAGGTTCATAGGTTTAACAAGTCTCAACAGGACTCTTTCTTACCTGTCATTGAAGATGGGAGCATTGTGTTTATTGGGGCCACTACCGAGAACCCTTCATTTCATTTAATCACTCCTTTGTTGTCTAGGTGTCGTGTGCTTACCCTTAACCCCTTGAAACCCCACCATGTTGCTTTGTTGCTAAAGCGGGCAGTGAATGATTCAGAGAAAGGCTTGGTGCAAAGTGTTGATTTTCCAGTTGATGTAAGTGAGGATGTGATTGATTTTATAGCCAACAACTGTGATGGCGATGCTCGGGTGGCGTTGAATGCCTTGGAGATTTCTGCTATCACTGCAGTTGCACGGGTTGATGTTAAGCCATCTAAAGCAAttgttgaaaaagaagaagacatgGTTGTTcaggaaaatgaagaaaatagagtTGGTCCATCTGCTGCTGTTGTTACCCTTGACGATGCCAAGGAGGCACTTCAATGCAAGCACCTTGCTTATGATAAAGCTGGGGATGAGCACTATAACCTTATTAGTGCTTTGCACAAATCTATGAGGGGAAGTGATGCTAATGCCGCAATTTATTGGTTGGCAAGAATGTTAGAAGGAGGTGAAGAGCCTCTTTACATTGCAAGGAGACTCATAAGATTTGCAAGCGAGGATGTTGGGTTGGCTGATCCATCTGCTCTTAATCAGGCTGTTTCCTGCTACCAAGCTTGCCATTTTATAGGCATGCCTGAGTGCAATGTGATTCTAGCGCAGTGTGTTGCTTACTTGGCCTTAGCCCCTAAATCCATCGCTGTTTATCGAGCAATCGGGGCTGCTCAGAAGGTGGTAAAGGAATCAGTTGGACAGAATGAAGGAGTGCCGCTTCATCTGAGGAATGCTCCAACCAACCTAATGAAGGAACTTGGGTATGGGAAGGGATACATATACCCTCCTGATAATCCCTCTTTAACACAGAGCTACTTACCGCCTGCAATTCAAGGATACAAGTTCCTTGATTGGCCTGACAGGAACACCTCTGAAGAATA 1760 0.429 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTQTQKSSPNSGSDQSSDPTQNPNPSPFQPKLDRFFNFKSKGQSHNASFPTITAIAGPEEEEEGTEELTPPKRVKQSSGFFLNRFHQKTVEKEKKQHHEPLYERMRPRTLNDVVGQDHLLANSSLLRSAIERNRLPSIVFWGPPGTGKTSIAKAIVNSASLQKQRQQQCPYYRFVSLSAVTSGVKDVRDAVEEARKLKVKSNLRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHHVALLLKRAVNDSEKGLVQSVDFPVDVSEDVIDFIANNCDGDARVALNALEISAITAVARVDVKPSKAIVEKEEDMVVQENEENRVGPSAAVVTLDDAKEALQCKHLAYDKAGDEHYNLISALHKSMRGSDANAAIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPSALNQAVSCYQACHFIGMPECNVILAQCVAYLALAPKSIAVYRAIGAAQKVVKESVGQNEGVPLHLRNAPTNLMKELGYGKGYIYPPDNPSLTQSYLPPAIQGYKFLDWPDRNTSEE 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03276 586 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 377 IPR027417 -
Bva12g03276 586 Pfam MgsA AAA+ ATPase C terminal 429 581 IPR021886 -
Bva12g03276 586 Gene3D - 2 56 - -
Bva12g03276 586 SUPERFAMILY UBA-like 3 40 IPR009060 GO:0005515
Bva12g03276 586 Gene3D - 122 295 IPR027417 -
Bva12g03276 586 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 15 584 - -
Bva12g03276 586 Pfam ATPase family associated with various cellular activities (AAA) 173 291 IPR003959 GO:0005524|GO:0016887
Bva12g03276 586 Gene3D - 403 506 - -
Bva12g03276 586 SMART AAA_5 169 297 IPR003593 -
Bva12g03276 586 CDD AAA 149 290 - -
Bva12g03276 586 MobiDBLite consensus disorder prediction 35 68 - -
Bva12g03276 586 CDD HLD_clamp_RarA 297 403 - -
Bva12g03276 586 Gene3D - 297 371 - -
Bva12g03276 586 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Bva12g03276 586 Gene3D - 507 586 - -
Bva12g03276 586 MobiDBLite consensus disorder prediction 35 57 - -
Bva12g03276 586 Pfam UBA/TS-N domain 4 35 IPR015940 -
Bva12g03276 586 SUPERFAMILY post-AAA+ oligomerization domain-like 413 582 IPR008921 GO:0003677|GO:0006260
Bva12g03276 586 Pfam AAA C-terminal domain 324 428 IPR032423 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03276 Bva-Chr12 23594828 23596588 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03276 135 429 Core DNA Replication Machinery Family AT1G77470 26.159 3.08e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03276 K07478 - egr:104433924 803.897