Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g03262 ATGGGTTATATATGTGATTTTTGTGGGGATCAGAGATCCATTGTGTTCTGCCGTTCTGATAATGCGAGCTTATGTTTATCGTGTGATCAAAATGTTCATTCTGCTAATGCCCTCTCTAGACGTCATTCAAGAATCCTTTTATGTGAGAGATGCAATTCACAGCCTGCACTAGTAAGGTGTGCTGAAGAGAACATTTCTCTTTGTCAGAATTGTGATTGGTTGGCTCATGGTGCCTGCACATCATCTTCAACGCATAAGAGGCAAACAATTAGCTGCTACACCGGCTGCCCTTCTGCAGCCGAACTTTCTTCAATGTGGTCATTTGTCTTAGATATCCCATCCGTCGGTGAATCTACATGTGAACAGGAACTAGGATTGATGAGCATTAACGAGAACAGCAATAGGAGTACTTGGGTTTCTCCAGAAAGCCAGAATGCATCTATTTCAGCTCAAGTAACTGGTACATCCAACGTGGATAAATCATTGGTTGGAGCATCTTCAATGCCCGAATCAAGCTTAGAACCCCGTATTATGGACCAGCCAGCTGGACCTGCCAATGAAACTCTGGCCAAGGTATACTGTCCTGGTACAAAAGCTCCTGGATTATGTGACGAAGATAATCTGTATGATGATTTCAACATGGATGAAATTGATCTGAATCTTGAGAACTATGAGGAACTTTTTGGTGTGACCCTCAGCCATTCTGAAGAGCTCCTCGATTATGGTGGAATCGATAGCttgtttgggacaaaggacaTGTCTGCTGGTGATTCCAACTGTCAGGGTGCTGTTGCAGCTGAGGGTTCATCAGCTGGACTGGTCAATGCAATGCAACCAGCTTGCAGCACTGGAGCGTCTGCTGATTCCATGTTAAGTACTAAAACTGAACCAATTCTTCATTTCATGGCAAGGCAAGGTCAGTCAAACCTTTCATTTTCCGGCGTTACCGGAGAGAGTAACCCTGCAGATTATCAAGATTGTGGGGCTTCTTCAATGCTTCACATGGGAGAACCTCTGTGGTGTCCTCCTTGCCCAGAGAGTTCCCTACATTCTGCTAACCGCAGTAACGCTGTCATGcgttataaagaaaagaagaagactcGCAAGTTTGATAAAACAGTGAGGTATGCCTCTCGGAAGGCAAGGGCTGACGTGAGAAGGCGTGTGAAAGGCCGCTTCGTGAAAGCCGGTGAAGCCTATGATTATGACCCTCAGAGCCAAACCAGAAGCTACTG 1235 0.4405 MGYICDFCGDQRSIVFCRSDNASLCLSCDQNVHSANALSRRHSRILLCERCNSQPALVRCAEENISLCQNCDWLAHGACTSSSTHKRQTISCYTGCPSAAELSSMWSFVLDIPSVGESTCEQELGLMSINENSNRSTWVSPESQNASISAQVTGTSNVDKSLVGASSMPESSLEPRIMDQPAGPANETLAKVYCPGTKAPGLCDEDNLYDDFNMDEIDLNLENYEELFGVTLSHSEELLDYGGIDSLFGTKDMSAGDSNCQGAVAAEGSSAGLVNAMQPACSTGASADSMLSTKTEPILHFMARQGQSNLSFSGVTGESNPADYQDCGASSMLHMGEPLWCPPCPESSLHSANRSNAVMRYKEKKKTRKFDKTVRYASRKARADVRRRVKGRFVKAGEAYDYDPQSQTRSY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g03262 411 CDD Bbox1_BBX-like 4 47 - -
Bva12g03262 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 411 - -
Bva12g03262 411 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Bva12g03262 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 411 - -
Bva12g03262 411 CDD Bbox1_BBX-like 47 90 - -
Bva12g03262 411 Pfam CCT motif 354 396 IPR010402 GO:0005515
Bva12g03262 411 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Bva12g03262 411 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bva12g03262 411 SMART bboxneu5 48 90 IPR000315 GO:0008270
Bva12g03262 411 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g03262 Bva-Chr12 23458204 23463432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g03262 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.225 2.79e-147 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Bva12g03262 CCT 1e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g03262 - - gmx:100800832 643.269